Pairwise Alignments

Query, 179 a.a., ECF-family RNA polymerase sigma factor from Caulobacter crescentus NA1000

Subject, 186 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score = 65.9 bits (159), Expect = 4e-16
 Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 11/177 (6%)

Query: 11  LMLRGLDGDTAAYREGLALLGVRLRAY-FMRRMSGAPGDVEDLVQETLLAVHLKRSTWDS 69
           L+ + + GD  A+  G  +   + R + F+RR+ G+  +  DL QET +  +     W  
Sbjct: 8   LIQQAVRGDRQAF--GALVRAHQARVFHFIRRLLGSTDEAADLTQETFIRAYQALPRWRP 65

Query: 70  AQSFTAWAHAVARYKLIDHWRRRKIRQTLPLEDHVDFLADDAPDPGVALE-------LDR 122
                 W   +AR   +D  R+R+    L  ++  + + D AP P   L+       L+R
Sbjct: 66  EARLQTWLLQIARNAALDLLRQRQRHVVLAADEQAEPI-DPAPSPLRRLQSARDLEMLER 124

Query: 123 ALASLPQRQRMLVSDVKLTGLSLAEAGARAGISEGAAKVALHRALKALAERMRRADG 179
            LA LP  QR ++   ++ GLS  E  A   ++ G  K  L RA +AL    R+A+G
Sbjct: 125 LLARLPHEQREILLLREVEGLSYDELAATLQLNAGTVKSRLARAREALLHGYRQANG 181