Pairwise Alignments

Query, 179 a.a., ECF-family RNA polymerase sigma factor from Caulobacter crescentus NA1000

Subject, 215 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 56.6 bits (135), Expect = 3e-13
 Identities = 50/166 (30%), Positives = 79/166 (47%), Gaps = 10/166 (6%)

Query: 19  DTAAYREGLALLGVRLRAYFMRRMSGAPGDVEDLVQETLLAVHLKRSTWDSAQ-SFTAWA 77
           D +A+R      G ++R++ + R+S   G   DLVQETL  V  K   +D+ + + + W 
Sbjct: 49  DKSAFRALFDHFGPKVRSFGLSRLS-QQGLAMDLVQETLTTVWTKAHLFDTDRGNVSTWV 107

Query: 78  HAVARYKLIDHWRRRKIRQ-------TLPLEDHVDFLADDAPDPGVALELDRALASLPQR 130
           +A+ R +  D  RR +  +         PL D VD  A D  D  +   L++ L+ LP+ 
Sbjct: 108 YAIMRNQCFDMLRRVQHNREDAFGDDIWPLFD-VDTHAGDHGDHKLDALLNQYLSKLPKL 166

Query: 131 QRMLVSDVKLTGLSLAEAGARAGISEGAAKVALHRALKALAERMRR 176
           QR +V  + L  LS  E   R G+  G  K  L   L+ L   + +
Sbjct: 167 QREVVQGIYLQELSQQELADRLGVPLGTIKSRLRLGLEKLKSLLEK 212