Pairwise Alignments

Query, 179 a.a., ECF-family RNA polymerase sigma factor from Caulobacter crescentus NA1000

Subject, 189 a.a., RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 52.0 bits (123), Expect = 6e-12
 Identities = 45/167 (26%), Positives = 74/167 (44%), Gaps = 15/167 (8%)

Query: 19  DTAAYREGLALLGVRLRAYFMRRMSGAPGDV-EDLVQETLLAVHLKRSTWD-SAQSFTAW 76
           DTAA+         R++A+ ++  SGA   + ED  Q+ +  V  K   +D S  S   W
Sbjct: 29  DTAAFARLFRHFAPRIKAFLIK--SGASDTLAEDCAQDVMTTVWQKAHMFDPSRASVATW 86

Query: 77  AHAVARYKLIDHWRRRKIRQTLPLEDHVDFLADDAPDPGVAL-------ELDRALASLPQ 129
              +AR + ID  R+ +     P  + + +  +  PD    L       +L  AL  LP+
Sbjct: 87  IFTIARNRRIDMLRKER----RPEPEELPWGPEPEPDQADVLMLQQESEKLQAALIQLPE 142

Query: 130 RQRMLVSDVKLTGLSLAEAGARAGISEGAAKVALHRALKALAERMRR 176
           +QR+LV       +S +E   + G+  G  K  L  AL  L   +++
Sbjct: 143 KQRILVERCYFGDMSHSEIATQTGLPLGTIKSRLRLALDKLRHELKQ 189