Pairwise Alignments

Query, 179 a.a., ECF-family RNA polymerase sigma factor from Caulobacter crescentus NA1000

Subject, 182 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 47.4 bits (111), Expect = 1e-10
 Identities = 31/143 (21%), Positives = 65/143 (45%)

Query: 34  LRAYFMRRMSGAPGDVEDLVQETLLAVHLKRSTWDSAQSFTAWAHAVARYKLIDHWRRRK 93
           +R +F+    G     +DL Q+T +  +   +++ +  SF+ W + +A     D+ R RK
Sbjct: 33  VRRFFLHLTCGDSELSDDLAQDTFIKAYTNLASFRNLSSFSTWLYRIAYNIFYDYIRSRK 92

Query: 94  IRQTLPLEDHVDFLADDAPDPGVALELDRALASLPQRQRMLVSDVKLTGLSLAEAGARAG 153
               L   +       +  + G  +++ ++L SL + +R  ++   +  +S+ +     G
Sbjct: 93  EMADLDTREVDAVNCTEQANIGQTMDVYQSLKSLKEVERTCITLFYMEDVSIDKIAGITG 152

Query: 154 ISEGAAKVALHRALKALAERMRR 176
           I  G  K  L R  + LA  ++R
Sbjct: 153 IPAGTVKSHLSRGKEKLATYLKR 175