Pairwise Alignments

Query, 179 a.a., ECF-family RNA polymerase sigma factor from Caulobacter crescentus NA1000

Subject, 190 a.a., RNA polymerase sigma factor from Burkholderia phytofirmans PsJN

 Score =  142 bits (359), Expect = 3e-39
 Identities = 83/170 (48%), Positives = 105/170 (61%), Gaps = 3/170 (1%)

Query: 5   ETRLKALMLRGLDGDTAAYREGLALLGVRLRAYFMRRMSGAPGDVEDLVQETLLAVHLKR 64
           E RLKAL +RGLDG+ AAY+  L+ L   LR +  +R+     DVEDLVQE LLAVH  R
Sbjct: 14  EERLKALFVRGLDGNAAAYQAFLSDLTGHLRGFLRKRLFYLQDDVEDLVQEILLAVHNGR 73

Query: 65  STWDSAQSFTAWAHAVARYKLIDHWRRRKIRQTL--PLEDHVDFLADDAPDPGVA-LELD 121
            T+   Q  TAW HA+ARYKL D +R R  R+ L  PL+D ++  A    +P  A  +L 
Sbjct: 74  HTYRPDQPLTAWVHAIARYKLADFFRARSRREALHMPLDDELEIFATCDVEPAEARRDLS 133

Query: 122 RALASLPQRQRMLVSDVKLTGLSLAEAGARAGISEGAAKVALHRALKALA 171
           + L  LP RQR+ +  VKL GLS+ E     G+SE A KV +HR LKALA
Sbjct: 134 KLLEQLPDRQRLPILHVKLEGLSVTETAKLTGLSESAVKVGVHRGLKALA 183