Pairwise Alignments

Query, 358 a.a., periplasmic multidrug efflux lipoprotein precursor from Caulobacter crescentus NA1000

Subject, 366 a.a., RND efflux membrane fusion protein from Pseudomonas fluorescens FW300-N1B4

 Score =  112 bits (280), Expect = 2e-29
 Identities = 104/366 (28%), Positives = 163/366 (44%), Gaps = 30/366 (8%)

Query: 5   MWRTPLPPLAALLLAATLSACGGKTETDAPAPPTPVEAARVAAPDAAGAVTGA--GALER 62
           M+R  LP    + LA  LSACG +      AP   V  A V  P+ +     +  G +  
Sbjct: 1   MFRYALPLALPVSLAFLLSACGHEE-----APQVTVRPAMVVQPEPSAQAMESYPGEVRA 55

Query: 63  RREMALSFRIPGVLTTMKIEAGDSVRAGQLIAAIDPAGVDARQQQT-------QADLERV 115
           R E  L+FRI G ++   +E G  V+A Q +A +DP  V  + + T       +A+L  V
Sbjct: 56  RYEPDLAFRIGGKVSRRLVEEGQRVKADQPLAELDPQDVRLQLEATRAQVAAAEANLNLV 115

Query: 116 RRDLERDKVLFEKGYVSRQRIDDR-------TSALKAAQAAYDAAHFDRRWANLVSPVSG 168
           R + +R K L E+  VSR + D+         + LK  +A ++ +     +A L +P  G
Sbjct: 116 RAERDRYKTLMERQMVSRSQYDNAENLYRSGEARLKQIKAEFNVSTNQASYAVLRAPQDG 175

Query: 169 VVLERRAQAGEVVGAGQVVARVADLTSPLVLRLPLAARDAARIRVGDPATVKVDEIGETA 228
           VV +R  + G+VV AGQ V  +A      VL + L  +   R +VG P +V++    +  
Sbjct: 176 VVAKRAVEVGQVVAAGQTVFTLATDGEREVL-ISLPEQSFGRFKVGQPVSVELWTQPDQR 234

Query: 229 LNGRVTRVGEAADARTGAVLVEIELSAPPSTLRSGQVAHATLNVRAAPGVTTTYARVPAE 288
             GR+  +  AAD ++      I  +A       GQ A   +       ++     VP  
Sbjct: 235 FPGRIRELSPAADPKSRTFAARIAFTAGKVPAELGQSARVFIQTAEVVALS-----VPLS 289

Query: 289 AVLEANGQRAFVFRVDGGKA-RRTAVGFGGF-DGDDALVSGLPNGAQVITAGAGFVSDGE 346
           AV   NG   +V+ V      ++  V  G F +    ++ GL     V+ AG   + DG+
Sbjct: 290 AVTAENG-ATYVWVVGANNTLKKAPVRVGAFGEKTVPVLEGLNASDWVVAAGVHVLHDGQ 348

Query: 347 AVAVVD 352
            V  VD
Sbjct: 349 QVRPVD 354