Pairwise Alignments

Query, 358 a.a., periplasmic multidrug efflux lipoprotein precursor from Caulobacter crescentus NA1000

Subject, 367 a.a., Efflux transporter, RND family, MFP subunit from Pseudomonas fluorescens FW300-N1B4

 Score =  114 bits (285), Expect = 4e-30
 Identities = 110/367 (29%), Positives = 164/367 (44%), Gaps = 43/367 (11%)

Query: 13  LAALLLAATLSACGGKTETDAPAPPTPVEAARVAAPDAAGAVTGAGALERRREMALSFRI 72
           +  L L A L+ACG K   +   P   V+   V   D A AVT  G ++ R +  LSFR+
Sbjct: 9   MVGLSLIALLTACGDKKPVEKDRPRVFVQ--EVKPTDYAAAVTLTGDVQARVQTELSFRV 66

Query: 73  PGVLTTMKIEAGDSVRAGQLIAAIDP----AGVDARQQQTQADLERVRRD---LERDKVL 125
            G +    ++ GD V A Q++A +DP      VD+ Q Q  A+  RV++      R + L
Sbjct: 67  GGKIIQRMVDVGDRVSAKQVLAKLDPKDLQTSVDSAQAQVVAEQARVKQTAAAFVRQQKL 126

Query: 126 FEKGYVSRQRIDDRTSALKAAQAAYDAAHF-------DRRWANLVSPVSGVVLERRAQAG 178
             KGY S+   D   +AL+++Q+A  AA            +  L++   GV+  R+A+ G
Sbjct: 127 LPKGYTSQSEYDSAQAALRSSQSALSAAQAQLANARDQLSYTALIADAPGVITARQAEVG 186

Query: 179 EVVGAGQVVARVADLTSPLVLRLPLAARDAA-----RIRVGDPA----TVKVDEIGETAL 229
           +VV A          T P+        RDA       +    PA     V + +  +   
Sbjct: 187 QVVQA----------TVPIFSLARDGERDAVFNVYESLLTEPPADRSIVVSLLDNPKIKT 236

Query: 230 NGRVTRVGEAADARTGAVLVEIELSAPPSTLRSGQVAHATLNVRAAPGVTTTYARVPAEA 289
            G V  V  A  A+TG V V++ L + P  ++ G V  AT     A  V  T   +P  A
Sbjct: 237 TGTVREVTPAVSAQTGTVQVKVSLDSLPEGMQLGSVVSAT-----AKPVGKTAVELP-WA 290

Query: 290 VLEANGQRAFVFRVDG-GKARRTAVGFGGFDGDDALVS-GLPNGAQVITAGAGFVSDGEA 347
            L  N     V+ VD  G+A+   V  G +     +VS GL  G +V+TAG   +  G  
Sbjct: 291 ALTKNLSDPAVWLVDAEGRAQLHTVTVGRYLTGKVIVSAGLNGGEKVVTAGGQLLHPGVR 350

Query: 348 VAVVDPT 354
           V +V+ T
Sbjct: 351 VEIVENT 357