Pairwise Alignments

Query, 358 a.a., periplasmic multidrug efflux lipoprotein precursor from Caulobacter crescentus NA1000

Subject, 417 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 87/326 (26%), Positives = 150/326 (46%), Gaps = 9/326 (2%)

Query: 33  APAPPTPVEAARVAAPDAAGAVTGAGALERRREMALSFRIPGVLTTMKIEAGDSVRAGQL 92
           A A   P+ +ARV A + A  ++  G L   R + ++  + G +  + +    +V  GQ+
Sbjct: 59  AGARAVPIASARVEAHEVAQHLSLVGKLAANRSVQIAAEVSGKVQAINLSDNQAVSQGQV 118

Query: 93  IAAIDPAGVDARQQQTQADLERVRRDLERDKVLFEKGYVSRQRIDDRTSALKAAQAAYDA 152
           +  ++ A   A   + +A L   RR L   K L ++  +++  ID + +++  A+A   A
Sbjct: 119 LVHLEDAKAKANLAEAKAYLNDERRKLGEYKRLIKQHAITQTEIDAQLASVDIAEARLQA 178

Query: 153 AHFDRRWANLVSPVSGVVLERRAQAGEVVGAGQVVARVADLTSPLVLRLPLAARDAARIR 212
           A  D  +  L +P  GV+       G++V  G  +  + DL+S + L L +  R  ++I 
Sbjct: 179 AQADLDYHTLKAPFDGVIGLVDFSLGKLVSVGSELVSLDDLSS-MRLDLQIPERYLSQIY 237

Query: 213 VGDPATVKVDEIGETALNGRVTRVGEAADARTGAVLVEIELSAPPSTLRSGQVAHATLNV 272
           +G P             +G+V  +    ++ T  + V +    P   LR G +  A L+ 
Sbjct: 238 LGMPVVASSSAWPGEQFHGQVVAMAPRINSETLNLKVRVNFDNPSLQLRPGMLISARLDF 297

Query: 273 RAAPGVTTTYARVPAEAVLEANGQRAFVFRVDGGK-ARRTAVGFGGFDGDDALV-SGLPN 330
             AP    T A VP +A LE +G + FV+ +D    ARRT V  G    D  L+  GL  
Sbjct: 298 --AP---VTQAVVPVQA-LEYSGTKRFVYVIDSDNIARRTQVTLGARIDDQVLIDDGLSL 351

Query: 331 GAQVITAGAGFVSDGEAVAVVDPTRL 356
           G +++  G   + DG  V  V+  +L
Sbjct: 352 GDRIVVKGLVNMRDGIKVEDVETGQL 377