Pairwise Alignments

Query, 358 a.a., periplasmic multidrug efflux lipoprotein precursor from Caulobacter crescentus NA1000

Subject, 398 a.a., RND family efflux transporter, MFP subunit from Dechlorosoma suillum PS

 Score =  115 bits (288), Expect = 2e-30
 Identities = 98/348 (28%), Positives = 147/348 (42%), Gaps = 15/348 (4%)

Query: 7   RTPLPPLAALLLAATLSACGGKTETDAPAPPTPVEAARVAAPDAAGAVTGAGALERRREM 66
           R P  P A     A     G      APA P PVE A  A           G L     +
Sbjct: 30  RAPGGPQAPAAAGAKAGGAG------APAAPLPVETALAAPQSITDEAAAVGTLRSNESV 83

Query: 67  ALSFRIPGVLTTMKIEAGDSVRAGQLIAAIDPAGVDARQQQTQADLERVRRDLERDKVLF 126
            L     G + ++  + G  V  G ++ A+D A  +A  QQ +A+      + +R + L 
Sbjct: 84  VLRPETAGRIASIGFKDGVPVAKGTVLVALDAATQEAELQQAKANHALAVTNFKRTEELL 143

Query: 127 EKGYVSRQRIDDRTSALKAAQAAYDAAHFDRRWANLVSPVSGVVLERRAQAGEVVGAGQV 186
            K ++S+Q +D   + LK  +AA   A        + +P +GVV  R    G+ V  G  
Sbjct: 144 AKKFISQQSLDTTAANLKVQEAAVALAEAKLAKTRIRAPFAGVVGIREVSVGDYVKEGAD 203

Query: 187 VARVADL-TSPLVLRLPLAARDAARIRVGDPATVKVDEIGETALNGRVTRVGEAADARTG 245
           +  + D+ T  L  RLP      +R++ G    V VD +   A    +  V    DA   
Sbjct: 204 LINLEDIRTLKLDFRLP--ELYLSRLQKGQAVEVSVDALPNQAFKAVLDAVDPLVDANGR 261

Query: 246 AVLVEIELSAPPSTLRSGQVAHATLNVRAAPGVTTTYARVPAEAVLEANGQRAFVFRVDG 305
           A+ +   L  P   LR G  A   L      GV      +P +A++   G++  VFR++ 
Sbjct: 262 AISLRARLDNPELKLRPGMFARVRLLFGNRDGV----LMIPEQAIVSGGGKQT-VFRIEE 316

Query: 306 GKARRTAVGFG-GFDGDDALVSGLPNGAQVITAGAGFVSDGEAVAVVD 352
           GKA++  V  G   +    ++SGL  G ++ITAG   V DG  V  VD
Sbjct: 317 GKAKKVEVKTGLRRNAQVEILSGLAAGDRIITAGQLKVQDGSPVKAVD 364