Pairwise Alignments

Query, 305 a.a., site-specific tyrosine recombinase XerD from Caulobacter crescentus NA1000

Subject, 305 a.a., site-specific tyrosine recombinase XerD from Rhodanobacter denitrificans FW104-10B01

 Score =  207 bits (528), Expect = 2e-58
 Identities = 130/292 (44%), Positives = 172/292 (58%), Gaps = 6/292 (2%)

Query: 10  AFLEMMAVERAAARNTLTAYGKDLEDARGFLSRSGHDLHDADAETIEAYFQDLGARGLSP 69
           AF+E +  E   A  TL AY +DL    G+L+  G DL  A  E I AY    GA+  + 
Sbjct: 20  AFVERVWSEDGLADRTLEAYRRDLAALAGWLAARGRDLRSARREDISAYH---GAQPAAV 76

Query: 70  ATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIERLLAAASAKD 129
            + ARR+SA R++Y F+        DP+  +  PK  R LPK L   EIE LL A     
Sbjct: 77  RSIARRQSAFRRYYAFLARSEPGFADPTLLIERPKLPRSLPKALAEREIEGLLGAPDT-G 135

Query: 130 SAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLAPLNDAARAA 189
           +  GLR   M+EL+YASGLR+SEL+ LPL AL      L V GKGGK+RL P+ + A A 
Sbjct: 136 TTLGLRDRAMLELMYASGLRVSELVELPLAALNPRQGVLRVTGKGGKDRLVPVGEEALAR 195

Query: 190 VKAYLVERPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGIDRQKVSPHVL 249
           +  YL+E    L KG++  P LF S+   G +T +    L++  A+  GI+ +++SPHVL
Sbjct: 196 IGTYLIEARPALAKGRQP-PALFLSQRGEG-MTRQMFWTLVKRYALKVGINPKRISPHVL 253

Query: 250 RHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHPLG 301
           RH+FATHLL  GADLR +Q LLGH+ ++TTQIYT VA E L  +    HP G
Sbjct: 254 RHSFATHLLNHGADLRALQMLLGHSSLSTTQIYTLVAKEGLKRLHAQHHPRG 305