Pairwise Alignments

Query, 305 a.a., site-specific tyrosine recombinase XerD from Caulobacter crescentus NA1000

Subject, 298 a.a., site-specific tyrosine recombinase XerD from Pseudomonas sp. BP01

 Score =  182 bits (462), Expect = 8e-51
 Identities = 117/293 (39%), Positives = 166/293 (56%), Gaps = 4/293 (1%)

Query: 9   DAFLEMMAVERAAARNTLTAYGKDLEDARGFLSRSGHDLHDADAETIEAYFQDLGARGLS 68
           D FL+ + +E+  + NT  +Y  DL    G+L      L DA  + I  +      +G  
Sbjct: 10  DQFLDALWLEKGLSDNTRVSYRSDLALFNGWLQEHSVSLPDAGRDLILDHLAWRLDQGYK 69

Query: 69  PATAARRRSAVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIERLLAAASAK 128
           P + AR  S +R F+R++L E     DP+ +V  P+ G+PLPK L   ++E LL A    
Sbjct: 70  PRSTARFLSGLRGFFRYLLREKLVAIDPTLQVDMPQLGKPLPKSLSEADVEALLQAPDLG 129

Query: 129 DSAQGLRLACMIELIYASGLRISELLALPLLALARDPAYLIVKGKGGKERLAPLNDAARA 188
           + A G R   M+E++YA GLR++EL++L L  +      L V GKG KERL P+ + A  
Sbjct: 130 E-AIGQRDRAMLEVLYACGLRVTELVSLTLDQVNLRQGVLRVMGKGSKERLVPMGEEAVV 188

Query: 189 AVKAYLVERPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGIDRQKVSPHV 248
            ++ Y  +  A L  G + S  LFPS+    ++T +     ++  A  AGID+  +SPH 
Sbjct: 189 WLERYQRDGRAELLNG-RPSDVLFPSQRGE-QMTRQTFWHRIKHHARVAGIDKP-LSPHT 245

Query: 249 LRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHPLG 301
           LRHAFATHLL  GADLRV+Q LLGH+D++TTQIYTHVA   L  +    HP G
Sbjct: 246 LRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAKARLQQLHAQHHPRG 298