Pairwise Alignments

Query, 749 a.a., excinuclease ABC subunit B from Caulobacter crescentus NA1000

Subject, 672 a.a., excinuclease ABC subunit B (RefSeq) from Shewanella amazonensis SB2B

 Score =  761 bits (1965), Expect = 0.0
 Identities = 399/672 (59%), Positives = 493/672 (73%), Gaps = 13/672 (1%)

Query: 47  FKLVSDYQPAGDQPTAIAELVEGLQNGDQDQVLLGVTGSGKTFTMAQVIARTQRPALILA 106
           F+L S Y PAGDQPTAIA+L++GL++G   Q LLGVTGSGKTFT+A VIA   RP +I+A
Sbjct: 6   FQLSSHYSPAGDQPTAIAKLIDGLESGLACQTLLGVTGSGKTFTVANVIATLGRPTIIMA 65

Query: 107 PNKTLAAQLYSEMKSFFPENAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRH 166
           PNKTLAAQLY EMK FFP NAVEYFVSYYDYYQPEAYVP ++T+IEKD+S+N  I++MR 
Sbjct: 66  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHIEQMRL 125

Query: 167 SATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLEVGQRVDEKQLIADLVAQQYKRN 226
           SAT+A+LER DVI+VASVS IYG+G  ++Y  M   L  G  + ++ ++  L   QY RN
Sbjct: 126 SATKALLERRDVIIVASVSAIYGLGDPDSYMKMLLHLRQGDFMGQRDILRRLSELQYSRN 185

Query: 227 DQAFERGTFRRRGDTIEIFPAHYEDRAWRVTMFGDEVEALSEFDTLTGKKTADLEMIKVY 286
           D   +RGTFR RG+ I+IFPA  E  A RV +F DE+E +SEFD LTG+ T  L    VY
Sbjct: 186 DIDLQRGTFRVRGEVIDIFPADSERDAIRVELFDDEIERISEFDPLTGQVTKRLARATVY 245

Query: 287 ANSHHVTPRPTLRQAIIAIRQELKERLEWLTANGKLLEAQRLEQRTTFDLEMIETTGSCA 346
             +H+VTPR  + +AI  I+ EL+ R +    N KL+EAQR+ +R  +D+EM+   G C+
Sbjct: 246 PKTHYVTPREKILEAIDQIKDELRVRKQQFLDNHKLIEAQRITERVQYDVEMMTELGYCS 305

Query: 347 GIENYSRYLSGRKTGEPPPTFFEYIPDNALLFTDESHQTVPQIGAMYKGDRNRKWTLAEY 406
           GIENYSRYLSGR  GE PPT  +Y+P + L+  DESH TVPQIGAMYKGDR+RK TL EY
Sbjct: 306 GIENYSRYLSGRAEGEGPPTLLDYLPADGLMIIDESHNTVPQIGAMYKGDRSRKTTLVEY 365

Query: 407 GFRLPSALDNRPLKFEEWDAMRPQSVHVSATPANWELERAGGVFAEQVIRPTGLIDPPVE 466
           GFRLPSALDNRPLKFEE++++ PQ++ VSATP  +ELE++G   AEQV+RPTGLIDP +E
Sbjct: 366 GFRLPSALDNRPLKFEEFESLMPQTIFVSATPGKYELEKSGDDIAEQVVRPTGLIDPELE 425

Query: 467 VRPVSKDGASQVDDVVDEIRQTIQKGYRTLVTVLTKKMAEDLTEYLTEQGIRVRYMHSDV 526
           VRPV    A QVDD++ E+ + +    R LVT LTK+MAEDLT+YL E G++VRY+HSD+
Sbjct: 426 VRPV----AIQVDDLLSEVAKRVAVNERVLVTTLTKRMAEDLTDYLDEHGVKVRYLHSDI 481

Query: 527 DTIERIEIIRDLRLGHFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIG 586
           DT+ER+EIIRDLRLG FDVLVGINLLREGLD+PE  LV ILDADKEGFLRSE SLIQTIG
Sbjct: 482 DTVERMEIIRDLRLGVFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIG 541

Query: 587 RAARNVDGKVILYADRVTGSMERAMAETARRREKQHAYNLEHGITPESVKRDIKDILN-- 644
           RAARNV+GKVILYADR+T SM RAMAET RRR KQ  +N EHGI P  V + I D+++  
Sbjct: 542 RAARNVNGKVILYADRITDSMARAMAETERRRTKQMQFNEEHGIIPRGVVKKITDVMDVG 601

Query: 645 --SPYERGDRVLVPMGMSETDDRPFSGDN---FKAALKDLEAKMREAAANLEFETAARLR 699
             S   RG   +   G S    +P    +       +  LE +M + A +LEFE AA LR
Sbjct: 602 ERSAPSRG--AVKASGRSRDVGKPSMRQDPHQIAVTIDALEKQMHQHARDLEFEQAAALR 659

Query: 700 DEIKRMKLMDLE 711
           DEI  ++   LE
Sbjct: 660 DEIHGLRQQLLE 671