Pairwise Alignments

Query, 749 a.a., excinuclease ABC subunit B from Caulobacter crescentus NA1000

Subject, 680 a.a., excinuclease ABC subunit B (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  756 bits (1951), Expect = 0.0
 Identities = 392/669 (58%), Positives = 487/669 (72%), Gaps = 13/669 (1%)

Query: 47  FKLVSDYQPAGDQPTAIAELVEGLQNGDQDQVLLGVTGSGKTFTMAQVIARTQRPALILA 106
           F L +DY+P GDQP AI ++V  ++ G  DQVLLGVTGSGKTFTMAQVIAR  RPAL+LA
Sbjct: 6   FILRTDYEPRGDQPEAIGQIVSNIEAGVTDQVLLGVTGSGKTFTMAQVIARCGRPALVLA 65

Query: 107 PNKTLAAQLYSEMKSFFPENAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRH 166
           PNKTLAAQLY+E +  FPENAVEYFVSYYDYYQPEAYVP +DTYIEKDSSIN+ ID++RH
Sbjct: 66  PNKTLAAQLYNEFRQLFPENAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDNIDKLRH 125

Query: 167 SATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLEVGQRVDEKQLIADLVAQQYKRN 226
           +AT A+L R DV++VASVSCIYG+GS E Y  +   +E GQR+    LI  LV  QY+RN
Sbjct: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYAKLVIPVETGQRLSMDALITRLVEVQYERN 185

Query: 227 DQAFERGTFRRRGDTIEIFPAHYEDRAWRVTMFGDEVEALSEFDTLTGKKTADLEMIKVY 286
           D  F RGTFR RGD +EI PA++ +RA R+  FGD+++A+SE D LTG+  A +    +Y
Sbjct: 186 DYDFHRGTFRVRGDVLEIIPAYHHERALRIEFFGDDIDAISEIDPLTGQVLASVGKTVIY 245

Query: 287 ANSHHVTPRPTLRQAIIAIRQELKERLEWLTANGKLLEAQRLEQRTTFDLEMIETTGSCA 346
             SH+V+ R  L +AI  IR EL ERL  L    +L+EAQRLEQRT  DLEM+E  G C 
Sbjct: 246 PASHYVSDRDNLVRAISDIRDELGERLRELKGGNRLVEAQRLEQRTMLDLEMMEEMGYCN 305

Query: 347 GIENYSRYLSGRKTGEPPPTFFEYIPDNALLFTDESHQTVPQIGAMYKGDRNRKWTLAEY 406
           G+ENYSR+L GRK G+PP    +Y PD+ LLF DESH TV Q+GAMYKGDR+RK TL +Y
Sbjct: 306 GVENYSRHLDGRKAGDPPSCLLDYFPDDFLLFVDESHITVSQVGAMYKGDRSRKSTLVDY 365

Query: 407 GFRLPSALDNRPLKFEEWDAMRPQSVHVSATPANWELERAGGVFAEQVIRPTGLIDPPVE 466
           GFRLPSALDNRPL+F E+ A   Q+++VSATP  WEL+R+ G+ AEQ+IRPTGL+DP  E
Sbjct: 366 GFRLPSALDNRPLEFHEFLARLNQAIYVSATPGKWELDRSQGIVAEQIIRPTGLVDPITE 425

Query: 467 VRPVSKDGASQVDDVVDEIRQTIQKGYRTLVTVLTKKMAEDLTEYLTEQGIRVRYMHSDV 526
           VRP       QVDD++ E R    +  R LVT LTK+MAEDLTEY  E G+  RY+HSD+
Sbjct: 426 VRPTK----GQVDDLLGECRLRAARDERVLVTTLTKRMAEDLTEYFNEMGVAARYLHSDI 481

Query: 527 DTIERIEIIRDLRLGHFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIG 586
           DT+ER+ II+ LR   FDVLVGINLLREGLDIPE  LV+ILDADKEGFLRS  SLIQT G
Sbjct: 482 DTMERMAIIQALRRKEFDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSAGSLIQTFG 541

Query: 587 RAARNVDGKVILYADRVTGSMERAMAETARRREKQHAYNLEHGITPESVKRDIKDILNSP 646
           RAARNV+G+V++YAD VT SM+ AM ETARRRE+Q  YN  H I P ++++ ++   ++ 
Sbjct: 542 RAARNVEGRVLMYADVVTRSMQAAMDETARRRERQTGYNEAHHIVPATIRKAVETPFDAI 601

Query: 647 Y-----ERGDRVLVPMGMSETDD--RPFSGDNFKAA--LKDLEAKMREAAANLEFETAAR 697
           Y      +G +     G ++  +   P+S D  + A  ++ LE  MREAA  LEFE AA 
Sbjct: 602 YAEAAEAKGRKGKGRKGAAQAAETFAPWSSDPHELAKQIQQLERDMREAAKELEFERAAE 661

Query: 698 LRDEIKRMK 706
           LRD I+ ++
Sbjct: 662 LRDRIRLLR 670