Pairwise Alignments

Query, 749 a.a., excinuclease ABC subunit B from Caulobacter crescentus NA1000

Subject, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  737 bits (1902), Expect = 0.0
 Identities = 382/670 (57%), Positives = 480/670 (71%), Gaps = 14/670 (2%)

Query: 47  FKLVSDYQPAGDQPTAIAELVEGLQNGDQDQVLLGVTGSGKTFTMAQVIARTQRPALILA 106
           F+L ++++P GDQP AI ++V  L +G +DQVLLGVTGSGKTFT+A VIA   RPALILA
Sbjct: 6   FRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALILA 65

Query: 107 PNKTLAAQLYSEMKSFFPENAVEYFVSYYDYYQPEAYVPRTDTYIEKDSSINEQIDRMRH 166
           PNKTLAAQLY+E ++ FP+NAVEYFVSYYDYYQPEAYVP +DTYIEKDSSIN+ ID++RH
Sbjct: 66  PNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRH 125

Query: 167 SATRAILERDDVIVVASVSCIYGIGSVETYTAMTFTLEVGQRVDEKQLIADLVAQQYKRN 226
           +AT A+L R DV++VASVSCIYG+GS E Y  +   +E GQR     L+  LV  QY+RN
Sbjct: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQRN 185

Query: 227 DQAFERGTFRRRGDTIEIFPAHYEDRAWRVTMFGDEVEALSEFDTLTGKKTADLEMIKVY 286
           D  F RGTFR RGD +E+ PA++ +RA R+  FGD+++A+SE D LTG+    +    +Y
Sbjct: 186 DFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTVIY 245

Query: 287 ANSHHVTPRPTLRQAIIAIRQELKERLEWLTANGKLLEAQRLEQRTTFDLEMIETTGSCA 346
             SH+V+ R  L +A+  IR EL ERL    +  +L+EAQRLEQRT  DLEM+E  G C 
Sbjct: 246 PASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGYCN 305

Query: 347 GIENYSRYLSGRKTGEPPPTFFEYIPDNALLFTDESHQTVPQIGAMYKGDRNRKWTLAEY 406
           GIENYSR+L GR  G+PP    +Y PD+ LLF DESH TVPQ+GAMYKGDR+RK TL ++
Sbjct: 306 GIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLVDF 365

Query: 407 GFRLPSALDNRPLKFEEWDAMRPQSVHVSATPANWELERAGGVFAEQVIRPTGLIDPPVE 466
           GFRLPSALDNRPL+F E+     Q+V+VSATP  WEL+R+ GV AEQ+IRPTGL+DP VE
Sbjct: 366 GFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPVVE 425

Query: 467 VRPVSKDGASQVDDVVDEIRQTIQKGYRTLVTVLTKKMAEDLTEYLTEQGIRVRYMHSDV 526
           VRP       QVDD++ E R    +  R L+T LTK+MAEDLTE+L   G+ VRY+HSD+
Sbjct: 426 VRPT----RGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDI 481

Query: 527 DTIERIEIIRDLRLGHFDVLVGINLLREGLDIPECGLVAILDADKEGFLRSETSLIQTIG 586
           DT+ER+ II+ LR G  DVLVGINLLREGLDIPE  LV+ILDADKEGFLRS  SLIQT G
Sbjct: 482 DTMERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFG 541

Query: 587 RAARNVDGKVILYADRVTGSMERAMAETARRREKQHAYNLEHGITPESVKRDIKDILNSP 646
           RAARN  G+VILYAD VT SM  AM ETARRRE+Q A+N  +GI P ++++ +    ++ 
Sbjct: 542 RAARNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAI 601

Query: 647 YE----------RGDRVLVPMGMSETDDRPFSGDNFKAALKDLEAKMREAAANLEFETAA 696
           Y           RG        +    +   S ++    ++ LE +MREAA  LEFE AA
Sbjct: 602 YSAASEGGKGKGRGRGRQAAPAVENVAEYGTSPEDMAKHIQKLEREMREAAKELEFERAA 661

Query: 697 RLRDEIKRMK 706
            LRD I+ ++
Sbjct: 662 TLRDRIRLLR 671