Pairwise Alignments

Query, 394 a.a., PiuB-family transmembrane transporter from Caulobacter crescentus NA1000

Subject, 376 a.a., PepSY-associated TM helix domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  111 bits (277), Expect = 4e-29
 Identities = 98/363 (26%), Positives = 163/363 (44%), Gaps = 30/363 (8%)

Query: 41  WSWVHKWSSLVSTAFLLMLCITGLPLVFSHEIEHVLMEEAWTPARPDGPKLNLDQVLDTA 100
           W W H W  L +   L ++ +TG  LVF  E+EH+LM E    A     +L+  Q+L +A
Sbjct: 6   WKW-HGWLGLFAALPLFIIALTGSVLVFKSELEHLLMPEKVLAASET--RLSFTQLLRSA 62

Query: 101 LARKPGEVPAYMSFDEDRPVVNVTSVQPGGKAGVYSFQP--IDQTSGD--PAPPVAGHPV 156
               P        F  +    +   V    K G Y +Q   +D + G     P    H +
Sbjct: 63  DEALPQHEILGWQFAPNAGEADKLYV---AKQGTYDWQLLFVDPSQGSLLSQPVGLSHYL 119

Query: 157 MEFLLQLHTDMFLGLAGMLFLGAMGLLLIVALVSGVVLYAPFMRRLPFGTVRASKRARTR 216
           +++LL+LH  +     G+     + +LLI+  +SG +L+  F R   F T+R  K  R  
Sbjct: 120 LDWLLELHYTLLADHLGLAVTALVSILLILLSLSGFILHRQFWRT--FFTLRWGKSLRLF 177

Query: 217 WLDYHNLLGAVTAAWVLVVGATGVVNALATPIVGYWKNTALKEL--TAAYDSPVAPGQRS 274
             D H +LG + A   L++G TG    +   I+  W     K L  T +Y +     ++ 
Sbjct: 178 LSDSHKMLGIIGAPLFLILGFTGAWWNIEH-IIEEWHEPDPKTLIVTQSYYN-----KQL 231

Query: 275 SLQAAVDKAKQALPDKDLQFVAFPGSDYSTDHHYAVFFHGKTPLTTHLTTPALIDARTGE 334
            ++A + +A Q +P     +V FP   Y+  H +      +  L +   +    D ++G+
Sbjct: 232 DVEALLTQATQVIPGFQTHYVRFPDKSYAGIHLFGAA-QDRGALRSDYGSIVSFDDKSGQ 290

Query: 335 LAAIAPTPWYVKTLTLSQ------PLHFGDYGGMGLKILWALLDIATIVILASGLYLWLA 388
           L+A        K   L Q      PLH+G++GG+  KI+W ++     ++  SG  +W A
Sbjct: 291 LSASVDA---TKAGALYQFVDSFRPLHYGNFGGLVSKIIWCVVGFLPSLMALSGYLMWRA 347

Query: 389 KRK 391
           +RK
Sbjct: 348 RRK 350