Pairwise Alignments

Query, 394 a.a., PiuB-family transmembrane transporter from Caulobacter crescentus NA1000

Subject, 559 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 74.7 bits (182), Expect = 6e-18
 Identities = 87/376 (23%), Positives = 152/376 (40%), Gaps = 26/376 (6%)

Query: 33  MKARTLRAWSWVHKWSSLVSTAFLLMLCITGLPLVFSHEI----EHVLMEEAWTPARPDG 88
           MK    R  SW+H W+ L+    LL++   G    F HEI    E  L   A+   + + 
Sbjct: 1   MKETFFRTLSWLHTWAGLLVCWVLLLIFFAGSLSYFRHEISLWAEPELHRGAFQDYQANQ 60

Query: 89  PKLNLDQVLDTALARKPGEVPAYM-SFDEDR-PVVNVTSVQP---GGKAGVYSFQPIDQT 143
               LD+  D      P E   ++ +F   R P+++     P   G + G          
Sbjct: 61  VVSQLDKGQDYIENHSPAEAQRWLINFPTQRNPMLSFAWQLPPEKGQRRGKIEQHTALAD 120

Query: 144 SGDPAPPVAGHPVMEFLLQLHTDMFL--GLAGMLFLGAMGLLLIVALVSGVVLYAPFMRR 201
           S D    V      +F  +LH D+     +     +G   + +++AL+SG+V++    + 
Sbjct: 121 SSDMITHVRDSRGGDFFYRLHFDLHYMPAITARYIVGVCTMFMLIALISGIVIHKRIFKD 180

Query: 202 LPFGTVRASKRARTRWLDYHNLLGAVTAAWVLVVGATGVVNALATPIVGYWKNTALKELT 261
           L   + R +K AR+ WLD HN+   +   + L++  TG++  L    + +  +TA  E  
Sbjct: 181 L--FSFRQNKGARS-WLDAHNVSSVIALPYHLMITYTGLI-TLMLIYIPWTVSTAYPEDN 236

Query: 262 AAYDSPVAPGQR----SSLQAAVDKAKQALPDKDLQFVAFP-----GSDYSTDHHYAVFF 312
            A+   + P ++    S ++A   +  Q LP    Q+   P      S+    +    F+
Sbjct: 237 QAFLKELNPARQTEKASGIKAEQVRLSQLLPRVQAQWGDAPIKQVTVSNPKDQNSQVTFY 296

Query: 313 HGKTPLTTHLTTPALIDARTGELAAIAP--TPWYVKTLTLSQPLHFGDYGGMGLKILWAL 370
                  T  +T  +    TGEL   +P      V T      LH   +    L+IL+  
Sbjct: 297 QNTGKDVTDESTLLVFSGVTGELKYASPHEVSGAVVTYDTMMSLHTARFAAPLLRILFFF 356

Query: 371 LDIATIVILASGLYLW 386
             +    ++A+G  +W
Sbjct: 357 CGLLGCAMVATGTLMW 372