Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 193 a.a., RNA polymerase sigma factor RpoE from Pseudomonas stutzeri RCH2

 Score = 80.1 bits (196), Expect = 2e-20
 Identities = 56/186 (30%), Positives = 92/186 (49%), Gaps = 12/186 (6%)

Query: 7   DPDDALLAGVGRGDPSAVRTLLDRRLPRILALARRMLNDAGEAEDVAQETFLRAWKQARS 66
           + D  L+  V RGD  A   L+ +   +IL L  R ++D+ EA+DVAQE F++A++   +
Sbjct: 5   EQDQQLVERVQRGDKRAFDLLVMKYQHKILGLIVRFVHDSHEAQDVAQEAFIKAYRALAN 64

Query: 67  WKPGGARFDTWLHRVALNLCYDRL--RRRREVVTDAPPEQ---------IDPGPAPDAGL 115
           ++ G + F TWL+R+A+N   + L  R RR   +D   E          +    +P+  L
Sbjct: 65  FR-GDSAFYTWLYRIAINTAKNHLVARGRRPPDSDVSSEDAEFYEGDHALKDIESPERSL 123

Query: 116 MQSELSRRVEAALAALPARQREAIVLCHHQGLGNIEAAGLMAISVEALESLLSRGRRALK 175
           ++ E+   V   +  LP   R A+ L    GL   + A +M   V  + S + R R A+ 
Sbjct: 124 LRDEIEDTVHRTIQLLPEDLRTALTLREFDGLSYEDIASVMQCPVGTVRSRIFRAREAID 183

Query: 176 ASLADL 181
            +L  L
Sbjct: 184 KALQPL 189