Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 70.5 bits (171), Expect = 2e-17
 Identities = 53/184 (28%), Positives = 91/184 (49%), Gaps = 12/184 (6%)

Query: 9   DDALLAGVGRGDPSAVRTLLDRRLPRILALARRMLNDAGEAEDVAQETFLRAWKQARSWK 68
           D  L+  V  GD  A   L+ R   ++  L  R ++++G+  DVAQE F++A++   +++
Sbjct: 7   DQVLIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFR 66

Query: 69  PGGARFDTWLHRVALNLCYDRL--RRRREVVTDAPPEQ---IDPGPA------PDAGLMQ 117
            G + F TWL+R+A+N   + +  + RR   +D   E+    + G A      P+   + 
Sbjct: 67  -GESAFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALKELSNPENITLS 125

Query: 118 SELSRRVEAALAALPARQREAIVLCHHQGLGNIEAAGLMAISVEALESLLSRGRRALKAS 177
            EL + V  A+ ALP   + A+ L    GL   E A +M   V  + S + R R A++  
Sbjct: 126 KELKKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEKK 185

Query: 178 LADL 181
           +  L
Sbjct: 186 IKPL 189