Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 184 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 72.4 bits (176), Expect = 4e-18
 Identities = 53/175 (30%), Positives = 84/175 (48%), Gaps = 7/175 (4%)

Query: 7   DPDDALLAG-VGRGDPSAVRTLLDRRLPRILALARRMLNDAGEAEDVAQETFLRAWKQAR 65
           D +DA LA    +GD SA   L  R   RI ALA R+  +   A+++ QE+F+R W +  
Sbjct: 15  DVNDASLAQQAAQGDKSAFEALYQRHHKRIYALALRLGGEPSLADEILQESFVRLWHKLP 74

Query: 66  SWKPGGARFDTWLHRVALNLCYDRLRRRREVVTDAPPE-QIDPGPAPDAGLMQSELSRRV 124
            ++ G ++F TW + +ALN     L++ R       P+ QI   P       Q++    +
Sbjct: 75  QFR-GESQFGTWFYSLALNQALSTLKQHRSFWARMVPDWQIQDAPEHS----QNDDGLLL 129

Query: 125 EAALAALPARQREAIVLCHHQGLGNIEAAGLMAISVEALESLLSRGRRALKASLA 179
           +  +  LP R R   VL   +G  + E A L+ IS    ++   R R  +K  L+
Sbjct: 130 DRLIVRLPERARLVFVLFAVEGFSHEEVASLLGISTGTSKAHYHRARELMKEMLS 184