Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 193 a.a., Sigma-24 (FecI) (NCBI) from Rhodospirillum rubrum S1H

 Score =  123 bits (309), Expect = 2e-33
 Identities = 70/172 (40%), Positives = 96/172 (55%), Gaps = 1/172 (0%)

Query: 9   DDALLAGVGRGDPSAVRTLLDRRLPRILALARRMLNDAGEAEDVAQETFLRAWKQARSWK 68
           D+ L+A V   D  A RTL+ R + R++ +ARR++    EAED+AQ+ FL+ W     W+
Sbjct: 19  DEELMALVRDNDREAFRTLVTRHIDRVVGVARRVVGPT-EAEDIAQDVFLKLWTNRDQWQ 77

Query: 69  PGGARFDTWLHRVALNLCYDRLRRRREVVTDAPPEQIDPGPAPDAGLMQSELSRRVEAAL 128
           PG   F TWL+RV  N C D  R+R  +  D  PE  D    P      SE + RV  AL
Sbjct: 78  PGAGSFRTWLYRVVTNRCIDHTRKRTAIPIDDAPEIPDDARGPLENCHASETADRVRQAL 137

Query: 129 AALPARQREAIVLCHHQGLGNIEAAGLMAISVEALESLLSRGRRALKASLAD 180
             L   QR AI L +++ L   E A +M +S+ A+ESLL RGR  L+  LA+
Sbjct: 138 RFLSEPQRMAITLYYNEDLTAAEVATVMDLSLNAVESLLKRGRHKLRELLAE 189