Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 219 a.a., RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) from Phaeobacter inhibens DSM 17395

 Score =  155 bits (391), Expect = 6e-43
 Identities = 85/181 (46%), Positives = 108/181 (59%), Gaps = 2/181 (1%)

Query: 1   MVSDGNDPDDALLAGVGRGDPSAVRTLLDRRLPRILALARRMLNDAGEAEDVAQETFLRA 60
           M    +DPD ALL     GDP A   L  R +PR L +A R+L +  EAED+ QE  +R 
Sbjct: 28  MAEGVDDPDGALLIRFAAGDPEAAAVLTARLVPRALGVALRVLGNRAEAEDITQEAMVRL 87

Query: 61  WKQARSWKPGGARFDTWLHRVALNLCYDRLRRRR--EVVTDAPPEQIDPGPAPDAGLMQS 118
           W+QA  W+PG AR  TWL+RV +NLC D  RR R   V  DA P+  DP  +    +   
Sbjct: 88  WRQAEHWEPGRARLSTWLYRVVMNLCIDHKRRLRGGHVDLDAIPDPPDPAKSAAEQMQDG 147

Query: 119 ELSRRVEAALAALPARQREAIVLCHHQGLGNIEAAGLMAISVEALESLLSRGRRALKASL 178
                ++ AL  LP RQR+A+VL H + L N E AG+M ISVEA+ESL +RG+RAL A L
Sbjct: 148 ARQDALQDALMQLPERQRQAVVLRHIEDLANPEIAGIMDISVEAVESLTARGKRALAAIL 207

Query: 179 A 179
           A
Sbjct: 208 A 208