Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 247 a.a., RNA polymerase sigma-70 RpoE type from Marinobacter adhaerens HP15

 Score = 76.3 bits (186), Expect = 4e-19
 Identities = 54/191 (28%), Positives = 93/191 (48%), Gaps = 15/191 (7%)

Query: 5   GNDPDDA----LLAGVGRGDPSAVRTLLDRRLPRILALARRMLNDAGEAEDVAQETFLRA 60
           G+ PD      L+  V  GD +A   L+ +   R+ ++  R + D+ E  D+ QETF++A
Sbjct: 52  GDHPDSQTDLQLVRKVRNGDRAAFDLLVVKYQSRVASIISRYVYDSQEVMDLTQETFVKA 111

Query: 61  WKQARSWKPGGARFDTWLHRVALNLCYDRL----RRRREVVTDAPPEQIDPG------PA 110
           ++    ++ G + F TWL+R+A+N   + L    RR +     A  E  D G       +
Sbjct: 112 FRAIERFR-GDSAFYTWLYRIAVNTAKNYLESRGRRPQGSADSAEAENFDDGSRLRDTAS 170

Query: 111 PDAGLMQSELSRRVEAALAALPARQREAIVLCHHQGLGNIEAAGLMAISVEALESLLSRG 170
           P+  L + +L + +  A+A LP   R A +L  + GL   + AG++   +  + S + R 
Sbjct: 171 PERLLQREQLQKELNKAIAQLPEELRSAFLLREYDGLSYEDIAGILECPIGTVRSRIFRA 230

Query: 171 RRALKASLADL 181
           R A+   L  L
Sbjct: 231 RDAVDRHLGPL 241