Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 200 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

 Score = 66.2 bits (160), Expect = 3e-16
 Identities = 49/174 (28%), Positives = 85/174 (48%), Gaps = 8/174 (4%)

Query: 9   DDALLAGVGRGDPSAVRTLLDRRLPRILALARRMLNDAGEAEDVAQETFLRAWKQARSWK 68
           D+ L+    +GD  A   L  +    +     R L D   AED+ QET+ R  + A +++
Sbjct: 15  DEQLMQRYAKGDGKAFEQLYLKHKGALYRYFVRQLGDKQLAEDLYQETWGRVIRAAANYE 74

Query: 69  PGGARFDTWLHRVALNLCYDRLRRRREV--VTDAPPEQIDP-----GPAPDAGLMQSELS 121
           P  A+F+TWL+R+A NL  D +R  + V  V+    E +D         PD    +++ S
Sbjct: 75  PS-AKFNTWLYRIAHNLLIDHVRAVKPVDLVSHDNEEGLDTFVGAEQEQPDVHWQETQKS 133

Query: 122 RRVEAALAALPARQREAIVLCHHQGLGNIEAAGLMAISVEALESLLSRGRRALK 175
             ++  +A LP  Q+EA +L    G      + +  +++EA +S +    ++LK
Sbjct: 134 LLLKTCIALLPQVQKEAFILNIEMGFTAAVISDIAGVTLEATKSRIRYAYQSLK 187