Pairwise Alignments

Query, 186 a.a., RNA polymerase ECF-type sigma factor from Caulobacter crescentus NA1000

Subject, 177 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella sp. ANA-3

 Score = 69.7 bits (169), Expect = 3e-17
 Identities = 44/167 (26%), Positives = 82/167 (49%), Gaps = 6/167 (3%)

Query: 12  LLAGVGRGDPSAVRTLLDRRLPRILALARRMLNDAGEAEDVAQETFLRAWKQARSWKPGG 71
           L+    +G+ +A + L     PR+ AL+ R+   A +AE++ QE F+  W++   ++ G 
Sbjct: 17  LITLASQGNRAAFKQLYLHHHPRVYALSLRLSGQASQAEEITQECFILVWQKLPQFR-GE 75

Query: 72  ARFDTWLHRVALNLCYDRLRRRREVVTDAPPEQIDPGPAPDAGLMQSELSRRVEAALAAL 131
           ++F TWLH + +N     +R+++       P + D     D      E  + ++  +  L
Sbjct: 76  SQFSTWLHSICVNQALSFIRKQKSFWARFIPMESD-----DEHSSADEHYQGLDKLILRL 130

Query: 132 PARQREAIVLCHHQGLGNIEAAGLMAISVEALESLLSRGRRALKASL 178
           P R R   VLC  +G  + E A L+ I+V   ++   R ++ L+  L
Sbjct: 131 PERARIVFVLCAIEGYQHEEIAQLLGIAVGTSKTQYHRAKQLLQEML 177