Pairwise Alignments

Query, 462 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Caulobacter crescentus NA1000

Subject, 455 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl- D-alanine ligase (RefSeq) from Shewanella amazonensis SB2B

 Score =  207 bits (526), Expect = 8e-58
 Identities = 154/453 (33%), Positives = 230/453 (50%), Gaps = 20/453 (4%)

Query: 10  EIAEAVGGQVAG-DFAVSGVSIDTRTVEPGDLFVPLVGVR-DGHDFVPQAVANGAAGVLA 67
           ++A A  G++ G D  VS +  D+R +  G LFV L G R DGH+F   A A GA+ +L 
Sbjct: 8   QLAAATHGRLCGEDVVVSHLDSDSRKMTVGSLFVALKGERFDGHEFAEAAAAAGASALLV 67

Query: 68  ARAVDA--PAVMVADTFKALEALGVAARERA-PQCKRGAVTGSVGKTSVTRAIEAGLRLA 124
            R +    P ++VADT KA+  +G   R+   P C   A+TGS GKTSV   +   L   
Sbjct: 68  ERELPLALPQLVVADTQKAMGQIGALVRDSVNPVCV--ALTGSNGKTSVKEMVATVLSQH 125

Query: 125 GKAHASVKSYNNHIGVPLTLARMPRDTERAVFEVGMNHAGEIVPLSGFVRPHAVAITTVG 184
                +  ++NN IGVPLTL R+ +  E  VFE+G NH GEI   S  VRP    +  VG
Sbjct: 126 HSVLFTAGNFNNEIGVPLTLLRLEQGHEYGVFELGANHKGEIDYTSSLVRPSVSLVNNVG 185

Query: 185 PVHIENFSDGEAGVARAKAEILAGLQPGGIAVLNADNHWFDFLKGEAEKVGATVWSFGEA 244
             H+E F   EAGVA AK+EI   L   G+ ++N D+ + + +  + +  G  V +FG  
Sbjct: 186 SAHLEGFG-SEAGVAEAKSEIYLHLAQDGVGIVNLDDRYAETMLNKLK--GKRVLTFGLG 242

Query: 245 AGATARLTGFQVEGAGA-TVSVDLRGEALTFPIHQTGVHWGPNSLCVLLMLEALDVPRET 303
           AGA         +  G  +  +   G+ +T  +   G H   N+L    +  AL +P + 
Sbjct: 243 AGAEITAREVTADAFGRYSFYLCHGGDHVTVSLPLAGKHQVSNALATAAICIALGLPLQE 302

Query: 304 ALAALAAFAPIEGRGAEKTIRIPGGAFTLVDESYNANPVSMQAALKTLGARKVAGRRVVA 363
             A LA  AP++GR   + +    G   LVD+SYNANP S+ AA+  L  ++++  R + 
Sbjct: 303 IAAGLAKLAPVKGRMMPRQL----GRLLLVDDSYNANPNSVGAAIDWL--KEISTNRTLV 356

Query: 364 LTDMLELGEGSAQFHAELAEPIAAANVDAVFLAGVHMKSLWEALPPTRRGGYAEVAEKLT 423
           L D+ ELG+ +A  H EL +    A +D++F  G   +   +A           +  +L 
Sbjct: 357 LGDLGELGDNAALLHFELGQKAKEAGLDSLFCLGSLSRHASQAFGSKHFEELDALVSELI 416

Query: 424 SVLAGAVQPGDV-VMVKGSNGSKAGVLAAALAA 455
           + + G    GDV ++VKGS  +    +  AL A
Sbjct: 417 NYINGV--EGDVTLLVKGSRSAAMERVVEALTA 447