Pairwise Alignments

Query, 462 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Caulobacter crescentus NA1000

Subject, 460 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  216 bits (550), Expect = 1e-60
 Identities = 156/438 (35%), Positives = 223/438 (50%), Gaps = 24/438 (5%)

Query: 18  QVAGDFAVSGVSIDTRTVEPGDLFVPLVGVR-DGHDFVPQAVANGAAGVLAAR--AVDAP 74
           +V  D  V  +S D+R + P  LFV L G R DGHDF   A+ NGA  +L  R  A D P
Sbjct: 17  RVGDDVTVQALSSDSRKIGPATLFVALKGDRFDGHDFAATAIENGAIALLVERELAFDIP 76

Query: 75  AVMVADTFKALEALGVAARERA-PQCKRGAVTGSVGKTSVTRAIEAGLRLAGKAHASVKS 133
            ++VAD  KA+ A+G   R++  P C   A+TGS GKTSV   I   L    +   +  +
Sbjct: 77  QLIVADCQKAMGAIGAYVRDQVNPICV--ALTGSNGKTSVKEMIATILSAKHQVLYTAGN 134

Query: 134 YNNHIGVPLTLARMPRDTERAVFEVGMNHAGEIVPLSGFVRPHAVAITTVGPVHIENFSD 193
           +NN IGVPLTL R+  + +  VFE+G NH GEI   SG VRPH   +  VG  H+E F  
Sbjct: 135 FNNEIGVPLTLLRLTPEDKYGVFELGANHKGEIDYTSGLVRPHVALVNNVGSAHLEGFG- 193

Query: 194 GEAGVARAKAEILAGLQPGGIAVLNADNHWFDFLKGEAEKVGATVWSFGEAAGATAR--- 250
            +AGVA+AK+EI   LQ  G A++NAD+ + D ++ +A+       SF +  GA  R   
Sbjct: 194 SQAGVAQAKSEIYNHLQEDGTAIINADDAFADVMRVKAKHYKQL--SFSQQEGAAKRQID 251

Query: 251 --LTGFQVEGAGA-TVSVDLRGEALTFPIHQTGVHWGPNSLCVLLMLEALDVPRETALAA 307
              TG +    G     ++  GE+    +   G H   N+L    +  AL +        
Sbjct: 252 VIATGHKANSDGCYRFMLNYAGESCEVVLPLAGRHQVSNALAAASVCIALGLNLTEIAEG 311

Query: 308 LAAFAPIEGRGAEKTIRIPGGAFTLVDESYNANPVSMQAALKTLGARKVAGRRVVALTDM 367
           L+   P++GR     +    G   L+D+SYNANPVS+ AA+  L  ++++  R + L D+
Sbjct: 312 LSQLTPVKGRMQPTQL----GRVRLIDDSYNANPVSVGAAIAWL--KEISENRCLVLGDL 365

Query: 368 LELGEGSAQFHAELAEPIAAANVDAVFLAGVHMKSLWEALPPTRRGGYAEVAEKLTSVLA 427
            ELG+ +   HAEL +      +DA+F  G   +    A         A + EKL   + 
Sbjct: 366 GELGDNAPLLHAELGQLARQQGIDALFCTGTLTQHTSHAFGAEHHDSVATLVEKLIKHIN 425

Query: 428 GAVQPGDV-VMVKGSNGS 444
               PG V V+VKGS  +
Sbjct: 426 QL--PGQVTVLVKGSRSA 441