Pairwise Alignments

Query, 462 a.a., UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase from Caulobacter crescentus NA1000

Subject, 479 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  354 bits (908), Expect = e-102
 Identities = 214/470 (45%), Positives = 265/470 (56%), Gaps = 19/470 (4%)

Query: 4   ALWTADEIAEAVGGQVAGDFAVSGVSIDTRTVEPGDLFVPLVGVRDGHDFVPQAVANGAA 63
           ALWTA E A A GGQ  GD+AV+GVSIDTR + PGDLFV L   RDGHDFV QA+A GA 
Sbjct: 3   ALWTAAEAAAATGGQARGDWAVTGVSIDTRELAPGDLFVALTAARDGHDFVAQALAAGAG 62

Query: 64  GVLAAR-----AVDAPAVMVADTFKALEALGVAARERAPQCKRGAVTGSVGKTSVTRAIE 118
             L +R     A DAP ++V D   ALEALG A R R  + +  A+TGSVGKTS    + 
Sbjct: 63  AALVSRIPEGVAEDAPLLLVPDVQTALEALGRAGRART-EARVIAITGSVGKTSAKEMMR 121

Query: 119 AGLRLAGKAHASVKSYNNHIGVPLTLARMPRDTERAVFEVGMNHAGEIVPLSGFVRPHAV 178
           A L   G+AHA+ +S+NNH GVPLTLARMP  TE AV E+GMNH GEI PL+   RPHA 
Sbjct: 122 AALASQGRAHAAERSFNNHWGVPLTLARMPAGTEVAVIEIGMNHPGEIAPLARMARPHAA 181

Query: 179 AITTVGPVHIENFSDGEAGVARAKAEILAGLQPGGIAVLNADNHWFDFLKGEAEKVGATV 238
            ITT+   H+E     EA +A  KA I  GL+P G+AV+  D      L+  AE  GA +
Sbjct: 182 LITTIAAAHLEALGSLEA-IAVEKASIFEGLEPDGLAVIPGDLPQTPILRAAAEDAGARI 240

Query: 239 WSFGEAAGATARLTGFQVEGAGATVSVDLRGEALTFPIHQTGVHWGPNSLCVLLMLEALD 298
            SFG  AG T RL+  Q  G  A     L G  +   I   G H+   +L VL  +  + 
Sbjct: 241 ESFGTGAGNTHRLSDVQAVGTAAVARAQLSGAEMALKIATPGTHFLETALGVLACVAGVG 300

Query: 299 VPRETALAALAAFAPIEGRGAEKTIR----IPGGAFTLVDESYNANPVSMQAALKTLG-- 352
                AL AL A+AP  GRG  + ++    I   +  L+D+++NANP SM AAL  L   
Sbjct: 301 ADPARALMALGAWAPPSGRGTRERLQLDPVIEAMSIELIDDAFNANPTSMGAALDMLAQA 360

Query: 353 ------ARKVAGRRVVALTDMLELGEGSAQFHAELAEPIAAANVDAVFLAGVHMKSLWEA 406
                  R   GRR+  L DMLELG   A  HA LA   A A +  V   G  M++L  A
Sbjct: 361 APAHDIGRIAKGRRIAILGDMLELGPDEAAMHAALAAHPAMAQITLVHCVGPRMQALHAA 420

Query: 407 LPPTRRGGYAEVAEKLTSVLAGAVQPGDVVMVKGSNGSKAGVLAAALAAL 456
           LP  +RG + E A+ L       V  GDVV+VKGS GS+  ++  AL  L
Sbjct: 421 LPEDKRGRWVETAQALVPHAHALVDAGDVVLVKGSKGSRVSLVVDALRKL 470