Pairwise Alignments

Query, 312 a.a., membrane transport protein from Caulobacter crescentus NA1000

Subject, 299 a.a., Predicted permeases from Pseudomonas stutzeri RCH2

 Score = 98.2 bits (243), Expect = 2e-25
 Identities = 88/308 (28%), Positives = 139/308 (45%), Gaps = 15/308 (4%)

Query: 6   VAARVWPFFLLVAAGVALSRLRLLDARMTQGLSAYVYWVGFPALLIHSLSRLGRPGPELW 65
           V   + P F L++ G      + L      GL++  + +  PA+L   ++R      EL 
Sbjct: 3   VVLAILPIFGLISLGYLFGWRQWLGNEGAAGLASVTFKLFMPAVLFSGIARA-----ELS 57

Query: 66  SGLAAYAAVGLAVMASLV-VGGRALGWSRPERAGA-AMAAGVGNSAFLAVPVTAAVLGAE 123
            G++    +   V   LV +   A+   R  RA    + A   N+  + +P+   +LGAE
Sbjct: 58  DGMSPMLLLAYFVPVLLVFLLVNAIAHQRAGRATPLGLTAAYSNNVLVGIPLVTTLLGAE 117

Query: 124 TARLVAGAIAADFVVLAAAGVGLLGWAAGRSVW-RAMAQAFQNPVVIAALLGLLLALLNL 182
           +   V   +    +VL +          G  V   A+ +   NP++I  LLG LL +  L
Sbjct: 118 SLVYVFAILVFHSLVLFSLQSFYAALGDGDKVSVPALLKNLANPLIIGLLLGALLNVSGL 177

Query: 183 ALPQPLDRAVGLAAASGSPVGLVALGAALGLPQTEDEPGPRAGPVVLAALAKLLAFPLLV 242
            LP+PL R  G  A +  P  L+ LG +L   +        +G V+L  L KL  FP LV
Sbjct: 178 ELPEPLWRVAGWLAQAALPCALMVLGISLSRYRLRP-----SGSVLLLTLIKLALFPALV 232

Query: 243 WLAIGLTPA-PAEFRTGATLVAAAPTAVNVFIQTRAYGVWPRGAARIVALTTALAIVSLS 301
           W   GL P   A+ R    L+AA P+ VNV    + +    R  +  V L+T +A++SL 
Sbjct: 233 WWLSGLLPGLNADARNVLVLLAACPSGVNVLAFVK-HSEDTRAVSSTVFLSTVMAVISLP 291

Query: 302 LVAILLTA 309
           L  +L ++
Sbjct: 292 LWMLLASS 299