Pairwise Alignments

Query, 312 a.a., membrane transport protein from Caulobacter crescentus NA1000

Subject, 310 a.a., Predicted permeases from Pseudomonas stutzeri RCH2

 Score =  105 bits (263), Expect = 1e-27
 Identities = 89/307 (28%), Positives = 140/307 (45%), Gaps = 15/307 (4%)

Query: 10  VWPFFLLVAAGVALSRLRLLDARMTQGLSAYVYWVGFPALLIHSLSRLGRPGPELWS-GL 68
           V P F L+  G    R   +       L+ +V W+G PALL   ++       +LW  G 
Sbjct: 8   VLPVFALILLGYLCRRSGRMGPTGASELNRFVVWLGLPALLFSVVAT--STWEQLWQPGF 65

Query: 69  AAYAAVGLAVMASLVVGGRALGWSRPERAGA-AMAAGVGNSAFLAVPVTAAVLGAETAR- 126
            A  A+G   + +  +  R L       A   A+ A   N+ ++ +P+   VLG +  + 
Sbjct: 66  IAAFAIGCLGVFAFTLAYRMLQKQPLVDASLDALGASYANTGYVGIPLCMLVLGDDALQP 125

Query: 127 -LVAGAIAADFVVLAAAGVGLLGWAAGRSVWRAMAQA----FQNPVVIAALLGLLLALLN 181
            +VA  +    +   A      G  AG+ + R + +      +NP+VIA LLG L A   
Sbjct: 126 AMVASIVVVCVLFAIALACVETGLHAGQGLLRTLGKVSSALVRNPLVIAPLLGALWAASG 185

Query: 182 LALPQPLDRAVGLAAASGSPVGLVALGAALGLPQTEDEPGPRAGPVVLAALAKLLAFPLL 241
           L LP PL   + L  A+ +P  LV+LG  L  PQ    PG +   V      KL+  PL+
Sbjct: 186 LQLPVPLATLLKLLGAAAAPCALVSLGLFLAQPQ----PGGKVQGVWPLVGLKLVVQPLI 241

Query: 242 VW-LAIGLTPAPAEFRTGATLVAAAPTAVNVFIQTRAYGVWPRGAARIVALTTALAIVSL 300
            W LA  +   P  +   A L++A PT    ++    YG      +R+V L+T  ++++L
Sbjct: 242 TWYLAFQVFELPTLWAYSALLLSALPTGTGPYMLAEFYGREGSRVSRVVLLSTLGSLITL 301

Query: 301 SLVAILL 307
           SL+ +LL
Sbjct: 302 SLILVLL 308