Pairwise Alignments

Query, 322 a.a., type IV secretory pathway, VirB11 ATPase from Caulobacter crescentus NA1000

Subject, 480 a.a., pilus assembly protein CpaF from Pseudomonas fluorescens FW300-N2E3

 Score =  170 bits (431), Expect = 6e-47
 Identities = 107/305 (35%), Positives = 164/305 (53%), Gaps = 22/305 (7%)

Query: 11  LAPLQPWLDRADVTDIWVNRPGEVWIETTKGVTSRLAAPDLTDQALQRLARQIAAASHQG 70
           L PL+P L    V+DI VN    V++E   G   R       DQ L  +  +I ++  + 
Sbjct: 123 LGPLEPLLADHTVSDILVNGSASVYVERF-GKLQRTDVRFRDDQHLLNIIDRIVSSLGRR 181

Query: 71  VSREQPLLSASLPNGARVQIIAPPATRGDLALAIRKHTLSDLSLSDLAIGGTLAPPALTG 130
           +    PL+ A L +G+RV  I PP      +++IR+  +  L+   L   GTL P     
Sbjct: 182 IDESSPLVDARLKDGSRVNAIIPPLAIDGPSVSIRRFAVDLLNTDSLIQVGTLTPAI--- 238

Query: 131 RADADAQLRALLSAGDVEGFLRTAIQRRKTIVLSGGTSSGKTTLLNALVKEIPAHERLVL 190
                    ALL        L+  ++ R  +++SGGT SGKTT+LN L   IP +ER+V 
Sbjct: 239 ---------ALL--------LKAIVRGRLNVLISGGTGSGKTTMLNVLSSFIPQNERIVT 281

Query: 191 IEDAPEIQLRHENAIGLIAARSDT-GEAQVDAEDLLQASLRMRPDRILLGELRGREAFAF 249
           IED+ E+QL+  + + L    S+  G  +V   +L++ SLRMRPDRI++GE+RG EA   
Sbjct: 282 IEDSAELQLQQPHVVRLETRPSNIEGRGEVSQRELVRNSLRMRPDRIVIGEVRGAEALDM 341

Query: 250 LRAVNTGHPGSITTVHADSPQGALDQIALLSLLAGVDLGWDTVRNYVRQVVDIVVQLNRV 309
           L A+NTGH GS+TT+HA++ + AL +I  +  + G       +R  +   +D+V+QL R 
Sbjct: 342 LTAMNTGHDGSLTTIHANTARDALGRIENMVSMTGATFPIKAMRQQIASAIDVVIQLERQ 401

Query: 310 GGGRK 314
             G++
Sbjct: 402 EDGKR 406