Pairwise Alignments

Query, 479 a.a., uracil DNA glycosylase superfamily protein from Caulobacter crescentus NA1000

Subject, 546 a.a., uracil-DNA glycosylase from Burkholderia phytofirmans PsJN

 Score =  180 bits (456), Expect = 1e-49
 Identities = 113/292 (38%), Positives = 146/292 (50%), Gaps = 29/292 (9%)

Query: 188 DAPSEDAQEALWRTYYASIFNPARLNPRQMRQEMPKRYWRNLPEAALIPGLIEAAQDRAA 247
           +A + +  EALW  YYAS+FN A          MP RYW+  P    +P  +   + R  
Sbjct: 278 EATTSEPTEALWLAYYASVFNGAPT-------PMPLRYWKTPPAGPPLPARLARERSRLG 330

Query: 248 AM---VTTPPRPPSERVLKAAQRHARDAPYNAGAPTTLDAVRAGVSVCRRCDLWREATQG 304
           A    VT P  PP E              Y+A  P   +     +  CRRC LWR A Q 
Sbjct: 331 AQSGTVTIPETPPLE--------------YSAVTPPLREPT-GPLPTCRRCALWRNAKQA 375

Query: 305 VPGDGAPSAPLMFVGEQPGDQEDLAGSPLVGPAGQIFDRALAEVSVRREQTYVTNAVKHF 364
           V G G   A LM VGEQPG+ E+  G P  GPAGQ+ D  L    + R   Y+T AVKH+
Sbjct: 376 VAGAGPARAALMVVGEQPGEHENQHGVPFTGPAGQLLDTVLVRAGLERSALYLTYAVKHY 435

Query: 365 KHELNGKRRLHKTPTQGEVSACRWWLDAERRLVRPTVIVMLGATAAFGVMGRPTPVRETR 424
           K E   +RR+H+TP + EV AC++WLD E   V P V+V LGATA   + G    + E  
Sbjct: 436 KWETLEQRRVHRTPARREVEACQYWLDHELAQVAPRVVVTLGATALKALTGAHVNLSEYL 495

Query: 425 GRPLPLPDGVQGLVTFHPSYLLRLPDAAARENAYRSFVDDLRLAGRLAGLAA 476
           G+ +    G   + T+HPSY L++ D   RE+     V   R A   AGLAA
Sbjct: 496 GQTID-HGGRLIVPTWHPSYALKMADGRLREDIVAGMVAAFRHA---AGLAA 543



 Score = 88.6 bits (218), Expect = 5e-22
 Identities = 81/296 (27%), Positives = 113/296 (38%), Gaps = 24/296 (8%)

Query: 5   RLASEVDFAGWRRAARVLRAEGARPESLVWTVERELFDN------------DEPVTDAAT 52
           R+A E  FA WR AAR L  +G  PE + W VE +  D+                  A  
Sbjct: 3   RIAIEPSFAAWRHAARELLRQGVEPERIEW-VECDPCDSAGSDSGNASAQQGSATAQATP 61

Query: 53  TFVVPAAFMEMAQQVVLNRSLDRFALLYRILWRLEREPRLIENPADQDMARARDMAKAVS 112
           T  +P   +   +      + DR+ LLYRILWR     R + +  D D A      ++V 
Sbjct: 62  TPAIPRELLAWLKTAACYYAPDRWPLLYRILWRWTHGERHVLDLQDVDGALLDQRIQSVE 121

Query: 113 RAAHKMKAFVRFRRVEDA-AKETYAAWFEPAHRVTEATAPFFARRFSNMNWTILTPDVCV 171
                + A   FRR + +     +  W+EP H +    A  FA R  +  W + TP    
Sbjct: 122 HEISDLVALTLFRRRDPSMGAPEFVGWYEPHHDLLAQAAERFAERMGDSTWMLATPQGAA 181

Query: 172 AWNGERLWVSEGADPADAPSEDAQEALWRTYYASIFNPARLNPRQMRQEMPKRYWRNLPE 231
            WNG  L +S    PA   +      L          PA L P Q +        ++ P 
Sbjct: 182 FWNGMLLQISR---PATEENGHVTHVLPAGQLNGPATPA-LPPGQRKGPTTPTLPKSQPN 237

Query: 232 AALIPGLIEAAQDRAAAMVTTPPRPPSERVLKAAQRHARDAPYNAGAPTTLDAVRA 287
               P L  + ++      TTP  PPS+R         R A   AG  TT +   A
Sbjct: 238 GPTAPTLPPSQRNGP----TTPTLPPSQRSEPTTPTLPRAA--MAGEATTSEPTEA 287