Pairwise Alignments

Query, 596 a.a., very-long-chain acyl-CoA synthetase from Caulobacter crescentus NA1000

Subject, 557 a.a., long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  121 bits (303), Expect = 9e-32
 Identities = 149/572 (26%), Positives = 219/572 (38%), Gaps = 81/572 (14%)

Query: 30  DSPNLICDDLEAAVDKWGPRPAITFEGKTITYADLDAMANRYAHWAKG-LGLTRGQTVAL 88
           D  + + D  E AV K+  +PA    G T+TY  L+  +  +A + +  L L +G  VAL
Sbjct: 20  DQYSSLIDMFETAVAKYADQPAFINMGATLTYRKLEERSRAFAAYLQNELKLQKGDRVAL 79

Query: 89  FMPNRIEYLAIWYGLTKVGVATALINNQLTGAALAHCLTISQAMHCIVDAETSPCFEDVK 148
            MPN ++Y    +G+ + G+    +N   T   L H L  S A   +V +  +   E+V 
Sbjct: 80  MMPNLLQYPIALFGILRAGMVVVNVNPLYTPRELKHQLIDSGAKAIVVVSNFARTLEEVV 139

Query: 149 GQLERHMQQWVLGPVHDDQRDLLKA---------LKSCSQLRPD---------RETAREG 190
            Q        V   +     DLL A         +K   +L P          RET   G
Sbjct: 140 DQTP------VKSVIITGLGDLLSAPKRTLVNFVVKYIKKLVPKYDLPHALSMRETLSRG 193

Query: 191 ---------LTASDTALYIYTSGTTGLPKAARITHMR--AQLYMRGFAGSTGAKDTDRIY 239
                    +T  D A   YT GTTG+ K A +TH    A +     A S   +D     
Sbjct: 194 RRMQYVKPVITGDDLAFLQYTGGTTGVSKGAMLTHSNVVANVLQANGAYSPALRDGSEFV 253

Query: 240 IT-LPLYHATGGLCALGAALLNGGS--VVLRKKFSATHFWPEIVAEQCTMFVYIGELCRY 296
           +T LPLYH    L       L+ GS  +++        F  E+     T    +  L   
Sbjct: 254 VTALPLYHIFA-LTVNCLLFLHKGSQNLLITNPRDIPGFVAELKKYPFTALTGVNTLFNA 312

Query: 297 LANQPEHELERAHKLRMIFGNGLR-----ADVWDDMLDRFKVGDVLEFYGATEGNVSF-- 349
           L N  +       +L++  G G+      AD W ++        +LE YG TE +     
Sbjct: 313 LVNSSDFSELDFSRLKLSIGGGMAVQKAVADKWQNITKT----RLLEGYGLTEASPLLTC 368

Query: 350 --FNFDGKRGAIGRIPSYLRKKFNIRIVKFDVETETPIRGPDGCCIEAGPEEVGECIGHI 407
             +N DG  G+IG  P+                T   +R   G  +  G  E GE  G  
Sbjct: 369 CPYNLDGYNGSIG-FPA--------------PSTLIQVRDDAGNVLPQG--ETGELFGK- 410

Query: 408 GSDARSNFTGYADKAATEKKVLHDVFEKGDAWFRTGDLMKVDHDGYIYFIDRIGDTFRWK 467
                    GY  +     KV+ +     D W  TGD+  +D  G+ Y +DR  D     
Sbjct: 411 ---GPQIMKGYWQRPEETAKVIDN-----DGWLATGDIGYMDEQGFFYIVDRKKDMILVS 462

Query: 468 GENVATSEVAERLAGFEGVLEVNVYGVKVGDLDGKAGMASLV-TEGDFDLEAFAKYVDEA 526
           G NV  +EV E +A    V+EV   GV   D  G+     +V  +     E   K+    
Sbjct: 463 GFNVFPNEVEEVVALHPKVIEVAAVGVP-NDASGELVKVFVVKKDKSLTAEDIIKHCRVH 521

Query: 527 LPSYARPLFVRLQKAIETTGTFKYRKIDLVNE 558
           L  Y  P  V  +  +  T   K  + +L +E
Sbjct: 522 LTGYKVPKLVEFRDELPKTNVGKILRRELRDE 553