Pairwise Alignments

Query, 859 a.a., ATP-dependent helicase from Caulobacter crescentus NA1000

Subject, 1488 a.a., DEAD/DEAH box helicase from Rhodanobacter denitrificans FW104-10B01

 Score =  252 bits (644), Expect = 1e-70
 Identities = 231/700 (33%), Positives = 311/700 (44%), Gaps = 83/700 (11%)

Query: 9   PQFQAWFAKRGWTPRDHQLAMLDKARAGRGALLIAPTGGGKTLAGFLPSLIELAERPPRN 68
           P   AWF      P   Q A     RAGR  L+ APTG GKTL  FL ++ EL      +
Sbjct: 10  PAVAAWFRGAFAAPTAAQAAAWPSIRAGRHTLVAAPTGSGKTLTAFLAAIDELVREGVAH 69

Query: 69  --TPAGVHT-LYISPLKALAVDVERNLLTPIR-------EMGLPIVA---ESRTGDTGES 115
             T A   T LY+SPLKAL+ D+  NL  P+        ++GLP VA     RTGDT + 
Sbjct: 70  GGTLADATTVLYVSPLKALSNDIHVNLEAPLESIRAELEKLGLPDVAIRTAVRTGDTPQV 129

Query: 116 RKARQKVRPPDILLTTPEQLALFCAWEGAREYFSDLRCVIIDEAHAIWPSKRGDLLALGL 175
            +   + +PP IL+TTPE L +       R   + +R VI+DE HAI  SKRG  LAL L
Sbjct: 130 ERNLLRKQPPHILVTTPESLYVLLGSASGRSMLASVRTVIVDEIHAIAGSKRGSHLALSL 189

Query: 176 SRLQQFAPN-MRRVGLSATVDDPDLVRKWL-GVNRVENPPPRAGEVSAEPTEGASTA--- 230
            RLQ      + R+GLSAT    + V  +L G          A   +     G   A   
Sbjct: 190 ERLQSLCQRRLLRIGLSATQKPIEKVADFLVGAGEYATLAALAPLPAGRGRLGGGEALDL 249

Query: 231 DLQLAL---SGPPGHLPRAQGRICEPDIDLVLGAG-GAQPVVEVLVSGGR---------- 276
           DL L L   S PP   P  +G           GA  G  PV  + V   R          
Sbjct: 250 DLDLKLKSKSTPPQPSPATEGS--------PFGASRGGNPVTIIDVGHTRPRDLAIEVPP 301

Query: 277 VPWAGHTAEHAMAEVYD----IIKAAKTALVFVNTRFQAEFAFQRLWE-LNDEGLPIALH 331
           VP     +  A   VYD    +++A +T LVFVNTR  AE A + L E L  E   +A H
Sbjct: 302 VPLEAVMSNDAWEAVYDRLAQLVRAHRTTLVFVNTRRMAERAARHLSERLGKEH--VAAH 359

Query: 332 HGSLSAEQRRKVEAAMARGELRAVVCTSTLDMGIDWGDVDLVIQLAAPKGASRMVQRIGR 391
           HGSL+ E R   E  + RGEL+ +V T++L++GID G+VDLV QL +P+  +  +QR GR
Sbjct: 360 HGSLAKELRLDAEQRLKRGELKVLVATASLELGIDIGEVDLVCQLGSPRSIAAFLQRAGR 419

Query: 392 ANHRLDEPSRAIFVPASRFEMLECRAAADAILENHLDGEPPRTGALDVLAQHIMG-CACS 450
           + H +D   +A   PA+R +++EC A  D +    LD        LDVLAQ I+   AC+
Sbjct: 420 SGHSIDGTPKARLFPATRDDLIECTALLDCVRRGELDALVMPPQPLDVLAQQIVAEVACT 479

Query: 451 EPFKPTDLYDEVRSAGPYAELTWEDFEAVVDFVSTGGYALRTYDKFRRIVQIADGLRTAR 510
           E +    LY  VR A PY EL   DF+AVV                     +A+G  T +
Sbjct: 480 E-WDEDALYALVRRAYPYRELARADFDAVVR-------------------MLAEGFTTRQ 519

Query: 511 NAQARQQHRMNVGAIISP---AMINIRIGGGRKPVGGRK----------IGEAEEGYFEQ 557
             +A   HR  V   + P   A +     GG  P               +G   E +  +
Sbjct: 520 GLRAAYIHRDAVNRQLRPRRSARLTALTSGGTIPDTADYKVVLEPQAIIVGTVNEDFAVE 579

Query: 558 LTPGDTFVFAGQVWRYNSLVGADAYVSPAPNDDPKMPSWGGSKFPLSTYLAERVRQMMHD 617
              GD F      +R   +      V  A    P +P W G     S  L+  V + + +
Sbjct: 580 SMAGDIFQLGNASYRIQRVERDRLRVEDAHGAPPSIPFWLGEAPGRSDELSFGVSR-LRE 638

Query: 618 EREWSALPGDVQEWLSWQKIRSAI-PAEGEMLLETFPRGK 656
           E       G V   L+W   +  +  A  + L++   R K
Sbjct: 639 ELSAQLDAGGVSGALAWLHDQLGLSEAAAQQLVDYLARAK 678