Pairwise Alignments

Query, 859 a.a., ATP-dependent helicase from Caulobacter crescentus NA1000

Subject, 1437 a.a., ATP-dependent DNA helicase from Pseudomonas fluorescens FW300-N2C3

 Score =  229 bits (583), Expect = 1e-63
 Identities = 248/888 (27%), Positives = 372/888 (41%), Gaps = 128/888 (14%)

Query: 9   PQFQAWFAKRGWTPRDHQLAMLDKARAGRGALLIAPTGGGKTLAGFLPSLIELAER--PP 66
           P  +AWF++        Q          R  L+ APTG GKTL  FL  L +L  R    
Sbjct: 16  PAVRAWFSQTFPAVTAAQARAWPLIGQRRSVLVAAPTGSGKTLTAFLAVLDDLVHRGLEQ 75

Query: 67  RNTPAGVHTLYISPLKALAVDVERNLLTPI-------REMGLP---IVAESRTGDTGESR 116
              P     +Y+SPLKAL+ D++ NL  P+       + MGLP   I    RTGDT +  
Sbjct: 76  GGLPDQTLVVYVSPLKALSNDIQINLQNPLAGITEQLQRMGLPPLPITTAVRTGDTPQKD 135

Query: 117 KARQKVRPPDILLTTPEQLALFCAWEGAREYFSDLRCVIIDEAHAIWPSKRGDLLALGLS 176
           ++  +   P IL+TTPE L +    +  R+  +  R VI+DE HAI  SKRG  LAL L 
Sbjct: 136 RSAMRKTAPHILVTTPESLYVLLGSDSGRQMLASTRTVIVDEIHAIAASKRGSHLALSLE 195

Query: 177 RLQQF-APNMRRVGLSATVDDPDLVRKWLGVNRVENPPPRAGEVSAEPTEGASTADLQLA 235
           RLQ   A  + R+GLSAT    + V ++L            GE                 
Sbjct: 196 RLQALCAEPLMRIGLSATQKPIEAVSRFL-----------VGE----------------- 227

Query: 236 LSGPPGHLPRAQGRICEPDIDLVLGAGGAQPVVEVLVSGGRVPWAGHTAEHAMAEVY--- 292
                       GR CE     ++  G A+P  ++ +    VP +   A      VY   
Sbjct: 228 ------------GRACE-----IVDIGHARPR-DLDIEVPPVPLSAVMANDVWELVYNRL 269

Query: 293 -DIIKAAKTALVFVNTRFQAEFAFQRLWELNDEGLPIALHHGSLSAEQRRKVEAAMARGE 351
            ++ +A +T LVFVNTR  AE   + L E   +   +A HHGSL+ E R   E  + RGE
Sbjct: 270 AELARAHRTTLVFVNTRRLAERLSRHLSERLGKDA-VAAHHGSLAKEFRLDAEQRLKRGE 328

Query: 352 LRAVVCTSTLDMGIDWGDVDLVIQLAAPKGASRMVQRIGRANHRLDEPSRAIFVPASRFE 411
           L+ ++ T++L++GID GDVDLV Q+A+P+  S  +QR+GR+ H++    +      +R +
Sbjct: 329 LQVLIATASLELGIDIGDVDLVCQIASPRSISAFLQRVGRSGHQVGGTPKGRLFATTRDD 388

Query: 412 MLECRAAADAILENHLDGEPPRTGALDVLAQHIMGCACSEPFKPTDLYDEVRSAGPYAEL 471
           ++EC A  D +    LD        LDVLAQ I+     + +    L +  R A PYAEL
Sbjct: 389 LIECAALLDCVRRGELDILHIPKAPLDVLAQQIVAEVSCQEWPEQALLETFRRAAPYAEL 448

Query: 472 TWEDFEAVVDFVSTGGYALRTYDKFRRIVQIADGL-RTARNAQARQQHRMNVGAIISPAM 530
               ++A++  ++ G   L      R      D + RT R  +  +   +  G  I    
Sbjct: 449 DEGHYQALLQMLAEG---LNGRQGVRSAYLHRDAVTRTLRGRRGSKLTAVTSGGTIPD-- 503

Query: 531 INIRIGGGRKPVGGRKIGEAEEGYFEQLTPGDTFVFAGQVWRYNSLVGADAYVSPAPNDD 590
            N       +P  G  IG   E +  +   GD F      +R   +      V  A    
Sbjct: 504 -NADYSVLLEP-QGLNIGSVNEDFAVESIAGDVFQLGNTSYRIIRVETGRVRVEDAQGQP 561

Query: 591 PKMPSWGGSKFPLSTYLAERV-RQMMHDEREWSALPGDVQEWLSW--------------- 634
           P +P W G     S  L+  V R     +    A PG++Q  L W               
Sbjct: 562 PTIPFWLGEAPGRSDELSWAVARLQARLDHLLGATPGNLQPALDWLTGTLRLNLASAEQL 621

Query: 635 -------QKIRSAIPAEGEMLLETF--PRGKRFHMVCYPFDGRLAHTTLAMLLTRRLDRL 685
                  +    A+P++  +L+E F    G    ++  PF  R+ +    + L +R  R 
Sbjct: 622 VDYLAPARLAFGALPSQDTLLMERFFDESGGTQLIIHTPFGSRI-NRAWGLALRKRFCRT 680

Query: 686 GVGPLGFVCNDYALNLWSLRPMDDLDLDELF-------AQDMLGDDLEAWLDESFMMKRS 738
               L    ++ A+ L SL      +LDE++       A+ +L   ++A LD      R 
Sbjct: 681 FNFELQAAASEDAIVL-SLSTSHSFELDEVWRYLNSHSAEQIL---IQAVLDAPLFGVRW 736

Query: 739 FKHCALIAGLIERRHPGAEKSGRQV--TFSTDLIYDVL------------RKHQPDHLML 784
             +  +   L   R+ G  K   Q+    S DLI  V              +  PDH ++
Sbjct: 737 RWNAGVALAL--PRYTGGRKVAPQIQRMKSEDLIASVFPDQIACLENLAGEREIPDHPLV 794

Query: 785 RCARLDAATGLLDIARLGDMLTRVR-GRIRHVALDRVSPFAVPMMLEI 831
                D     +D      +L R+  G+IR ++ D   P   P+  EI
Sbjct: 795 EQTLDDCLHEAMDSEGWLTLLRRMEAGQIRLISRD--LPVPSPLAAEI 840