Pairwise Alignments

Query, 859 a.a., ATP-dependent helicase from Caulobacter crescentus NA1000

Subject, 739 a.a., Lhr-like helicases from Pseudomonas stutzeri RCH2

 Score =  145 bits (365), Expect = 1e-38
 Identities = 187/702 (26%), Positives = 288/702 (41%), Gaps = 97/702 (13%)

Query: 7   LPPQFQAWFAKRGWTP-RDHQ-LAMLDKARAGRGALLIAPTGGGKTLAGFLPSLIELAER 64
           L P+ Q W    GWT  RD Q  A+     A +  ++ A T  GKT A FLP L  L + 
Sbjct: 16  LEPRIQRWIWTEGWTSLRDAQERAIPALLGADQDVIIAAATAAGKTEAAFLPILTNLLQD 75

Query: 65  PPRNTPAGVHTLYISPLKALAVDVERNLLTPIREMGLPIVAESRTGDTGESRKARQKVRP 124
             +  P  V  LYISPLKAL  D    L     E+ LP++A    GD   SRK R    P
Sbjct: 76  TEK--PGAV--LYISPLKALINDQWDRLARLCDELELPVIAWH--GDISASRKHRFLKSP 129

Query: 125 PDILLTTPEQLALFCAWEGAR--EYFSDLRCVIIDEAHAIWPSKRGDLLALGLSRLQQFA 182
             ILL TPE L      +G      F++LR +++DE HA   S+RG  L   + R++   
Sbjct: 130 EGILLITPESLEALFVNKGTSLAGLFANLRYLVVDELHAFIGSERGKQLQSLMHRVETII 189

Query: 183 PN-MRRVGLSATVDDPDLVRKWLGVNRVENPPPRAGEVSAEPTEGASTADLQLALSGPPG 241
              + RVGLSAT+ D  L   +L  N   +       VS   ++G+     Q+  +   G
Sbjct: 190 DRPLPRVGLSATLGDMTLAAAFLRPNAPHH-------VSVIESKGSG----QILKAQIRG 238

Query: 242 HLPRAQGRICEPDIDLVLGAGGAQPVVEVLVSGGRVPWAGHTAEHAMAEVYDIIKAAKTA 301
           ++   +    +P+ D V                        + +HA+AE    +      
Sbjct: 239 YVESKKALPVQPEGDDVF-----------------------SPDHAIAEHLFQVLRGSNN 275

Query: 302 LVFVNTRFQAE-FAFQRLWELNDEGLPIAL--HHGSLSAEQRRKVEAAMARGELRAV-VC 357
           L+F N+R Q E FA          G+P     HHGSL+ + R + E A+  G+  A  VC
Sbjct: 276 LIFPNSRTQVEWFADNLRRRCEQNGVPNEFWPHHGSLAKDIREETEKALKAGDRPATAVC 335

Query: 358 TSTLDMGIDWGDVDLVIQLAAPKGASRMVQRIGRANHRLDEPSRAIFV------------ 405
           T+TL++G+D G +  V+Q+ AP   + + QR+GR+  R   P  A  +            
Sbjct: 336 TTTLELGVDIGSIKTVVQIGAPPSVASLRQRLGRSGRR---PGEAAILRSYCKERQLDDG 392

Query: 406 -PAS---RFEMLECRAAADAILENHLDGEPPRTGAL---DVLAQHIMGCACSEPFKPTDL 458
            P S   R  +L+  A    +++     EPPR   L    ++ Q +   A        +L
Sbjct: 393 SPLSDRLRQGLLQSIAMIRLLMQGWF--EPPRVHGLHLSTLVQQCLSVIAQRGGATAAEL 450

Query: 459 YDEVRSAGPYAELTWEDFEAVVDFVSTGGYALRTYDKFRRIVQIADGLRTARNAQARQ-Q 517
           +  +  +GP+  +    F ++          LR   +   I Q   GL        R   
Sbjct: 451 WSTLIRSGPFTGVEQGSFLSL----------LRALGERDLITQETSGLLLPGVVGERLIN 500

Query: 518 HRMNVGAIISPAMINIRIGGGRKPVGGRKIGEAEEGYFEQLTPGDTFVFAGQVWRYNSLV 577
           H     A +S     +   G  KP+G   +          LT     +FAG+ WR  S+ 
Sbjct: 501 HYDFYSAFVSNEEFRLVCDG--KPLGALPVS-------RPLTVDQRIIFAGRRWRVTSVD 551

Query: 578 GADAYVSPAPNDDPKMPSWGGSKFPLSTYLAERVRQMMHDEREWSALPGDVQEWLSWQKI 637
                V    +     PS+ G    +   + + +R ++ +   +  L    QE L+  + 
Sbjct: 552 TEAKVVVVRSDPGGAPPSFDGLGARVHDRVRQEMRSVLLEADVYPYLDTTAQELLA--QA 609

Query: 638 RSAIPAEGEMLLETFPRGKRFHMVCYPFDGRLAHTTLAMLLT 679
           RSA    G         G + ++  + + G   +  LA+LLT
Sbjct: 610 RSAFSDLGLAHSSMTESGGKTYL--FSWRGDWTNDALAILLT 649