Pairwise Alignments

Query, 654 a.a., peptidyl-prolyl cis-trans isomerase from Caulobacter crescentus NA1000

Subject, 621 a.a., peptidyl-prolyl cis-trans isomerase D (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  150 bits (379), Expect = 2e-40
 Identities = 157/646 (24%), Positives = 262/646 (40%), Gaps = 60/646 (9%)

Query: 1   MLAGFRKFAKSPFAVVLFGLLIVSFAIFGISDVFKGPQGSGVISAGSRSMSAIDFKQRFD 60
           ML   R  ++   A  +  L+I+SFA  G+S                  ++  + +Q + 
Sbjct: 1   MLEKIRDGSQGVIAKGILVLVILSFAFAGVSSYLGSTSEVPAAEVNGDKITKAELEQAYQ 60

Query: 61  NYRKAMEQQNG---TTLTPDQAVEQGVDRQIVQELVLQESLAAALHKMGVAPSDKLVADT 117
           + R  MEQQ G     L+ D+   + + + +++ LV  + +  A   MG+  SD+ + + 
Sbjct: 61  SERARMEQQLGEMFAALSADERYLESIKQSVLERLVADKLIDQAAAAMGLRVSDEQIIEA 120

Query: 118 VHEQMSQLPPTTRPFDPITGKFDSRAYATLMQQNGLTPETYEASLRDEIAQTHFFSAIAD 177
           +  +         P     GKFD+  Y  +++Q G  P+T+ + +R ++ +    +A+  
Sbjct: 121 IKSE---------PAFQTDGKFDNERYQAILRQLGYQPQTFRSMMRVDMTRRQLTAALV- 170

Query: 178 GLK-----APRIYAALQGAYLLEAREVSAFVVNPSTVQRPNPPTDAQLTAFMKENADRLT 232
           G +       +  A LQG    + R++   VV+ +        TD Q+ ++   N  +  
Sbjct: 171 GTEFVLPGEAKQLAELQG----QTRDIRYLVVDSAPFLAKASVTDEQVKSYYDANQGQFM 226

Query: 233 RPETRVLSIMRVSATALEPSVTINPADVQKAFDFRKDSLARPETRTIVQI--------AA 284
            PE   L  + ++A        +   + Q  +D  K      E R    I        AA
Sbjct: 227 SPEKVSLEYVELNAADFAKDSKVTDEEAQTYYDEHKAQYVSNEKRLAAHILIALGSDEAA 286

Query: 285 PDAKAAAVISQRLGKGEDPAAVAKAYGKTPLVLTDKPK-----SAVPDRKVADAAFALQT 339
             AKA  +  Q L  G D AA+AKA  +  L      K       V D     A FALQ 
Sbjct: 287 AKAKAEDLAKQ-LDNGADFAALAKANSEDTLSAEQGGKLDWFEPGVMDPTFDTALFALQK 345

Query: 340 GQVSGPIIGDLGVAVVKVTKITPGAVATLDSVRPQIEAEVRSQTAQAKAYEQTQTYQDAR 399
           GQ SG +  D G  ++K+  I PG       V+ +I A+++ + A  + Y       D  
Sbjct: 346 GQHSGVVKTDFGFHIIKLLDIQPGTTVPFADVKTKIFAQLQEKKAVDQFYSLQSKLADTS 405

Query: 400 DAGADLISAASKAGALVITTAPVTAQGTDQMGQPFAGLTPDIIKTAFD---LSQGGESEL 456
               D ++  +K   + I T P+ ++       P A   PD++K AF    + QG  SE+
Sbjct: 406 YEVPDTLAETAKVVGVEIKTTPLFSRD----DVPAALNKPDVVKAAFSDPVMRQGLNSEV 461

Query: 457 VEAGKGEYYAVKVERIVPAALPPLAEVKPQLTAVWFGQEMAKRMKAKADELAARVKKGES 516
           +E        ++++    A   PLAEVK  +      ++  +  +AKA+EL A+VK G  
Sbjct: 462 IELEPNHVVVIRMKEHHDAGTMPLAEVKADIAERLKQEQANEAARAKAEELMAQVKAG-- 519

Query: 517 LEAVATAAQSNVQKIPGGLTRQNAQQHVALGQEFLGAAF-TAKPGAVFTARAGQQGQAYV 575
                 A  S   K   G   Q+    +      +G AF    P A            Y 
Sbjct: 520 -----AADVSLTAKTKLGRGAQDVDAAI------VGKAFQMPTPSAAPVVGTVGLANGYA 568

Query: 576 VAKLDAVRAAPTANVAQIAVLAQ---GQAANGLMRDLAEATRVVAR 618
           V  LD V AA + +   +  L Q    Q +    R L E+ +  A+
Sbjct: 569 VVALDKVNAADSVSDELVNALKQRLNAQYSEADYRGLIESLKANAK 614