Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor Mfd from Caulobacter crescentus NA1000

Subject, 1153 a.a., transcription-repair coupling factor from Synechococcus elongatus PCC 7942

 Score =  630 bits (1625), Expect = 0.0
 Identities = 405/1106 (36%), Positives = 606/1106 (54%), Gaps = 64/1106 (5%)

Query: 1    MSYDAKQIAKAAGGLTLAGAPEGFDALVMADIARARGGLTAFVARDTARAGAFIDALKFF 60
            +S D     +   GL L GA      LV + + +A+      +      AG +   L+  
Sbjct: 15   LSQDLLTKLEKQSGLRLIGAGRLAQGLVTSALVQAQSRSLLVICATLEEAGRWAAQLEGM 74

Query: 61   A-PEIEAVLFPSWDCLPYDRIGPSSGVSATRMATLSRLARGLGESKAAILVIAAPALLQR 119
              P +    +P+ +  PY+   P S +   ++  L+ L   L +S+   +V    +L   
Sbjct: 75   GWPTLH--FYPTSESSPYEAFDPESELVWGQLQVLADL---LEQSQPVAIVATERSLQPH 129

Query: 120  VPTKEVLLRASYAAKVGANVDIKDLERYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAA 179
            +P  E L       + G  V++ +L   FA  GY R  TV   G+++ RG +ID++P +A
Sbjct: 130  LPPVEALRPFCQTLQRGQEVNLGELADRFAQFGYERVDTVETEGQWSRRGDIIDLFPVSA 189

Query: 180  EEPVRLDLFGDTLESIRAFDPETQRSTKQLKEIDLLPVSEALLDADGIS-RFRKGYVAEF 238
            E PVRL+LFGD LE +R FDP TQRS  +++ + L P S A + A  ++ R    ++ E 
Sbjct: 190  ELPVRLELFGDELERLREFDPATQRSLDEIEVLRLTPTSYASVIAAALADRSLDDWLTE- 248

Query: 239  GAPGDDALYAAVSEGGRRAGLEHWLPLFYERMATLFDYLPAGALIGVDN--QATEARDER 296
                  A   A  EG    G+  +L + +ER A+L DYLPAG +I +D   Q     D  
Sbjct: 249  ------AEQEAWQEGQPPEGMRRFLGVAFERSASLLDYLPAGTVIAIDEPLQCRAHSDRW 302

Query: 297  LAMIQDAYDARASADRKSAYRPLAPEALYLTAEEWER-ELSDRTHRRFTPFQPQGLDVID 355
            +  +QD +  +A     + +R    +A +     ++R ELS     +        L V+D
Sbjct: 303  IEHVQDHWQEQAQV-WPAIHRDF--QAAWEEIRCFQRIELS-----QLNSSSDSELPVLD 354

Query: 356  LGAKLGRVFAAERAQDSVNLFEATADHAKALAAQGKRVLFASWSEGSS-ERLGTMLADHG 414
            L A+   V   +        F   AD  +      +R   + W   +   R+  +L +H 
Sbjct: 355  LAARSLPVLPHQ--------FGKLADFIRT-----ERDRHSIWLVSAQPSRMVALLQEHD 401

Query: 415  LKK--IPYAGYWQAAKANDPKVPQRVVLPLDH-------GFE--TDSLAVISETDILGDR 463
                 IP    + A    D    +RV + L H       GF   T  L +I++ +  G  
Sbjct: 402  CPSQFIPNPRDYPAI---DRLSEKRVPIALKHSGLAELEGFSLPTFRLTLITDRECFGQH 458

Query: 464  -LARP---RKKRRAANFLAEASALTPGDLVVHIDHGIGRYEGLKTLDVQGAPHDCLDLLY 519
             LA P   RK+RRAA+   +   L PGD VVH  HGIGR+  L++L + G   + L L Y
Sbjct: 459  VLASPTYVRKRRRAASKQVDRDRLKPGDYVVHRSHGIGRFVKLESLSLSGEMREYLVLQY 518

Query: 520  GGEAKLYLPVENIDLLTRYGAADAENVQLDKLGGAAWQGRKAKAKERLRVMAEGLIQIAA 579
              +  L +  + +  L+RY     E  +L  +   AW+  KAKA++ +R +A  L+++ A
Sbjct: 519  A-DGLLRVAADQMGSLSRYRGMGGERPELSSMTSKAWEKTKAKARKAVRKVAVDLLKLYA 577

Query: 580  ARQLKTVEETDPPSGVFDEFCARFPYEETDDQLSAIHDVLEDLSSGKPMDRLICGDVGFG 639
             R  +      P      E    FPY+ T DQL A+  V  D+ S +PMDRL+CGDVGFG
Sbjct: 578  QRSQQEGHAYPPDQPWQQELEESFPYQPTADQLKAVEAVKRDMESPQPMDRLVCGDVGFG 637

Query: 640  KTEVALRAAFVVAMSGKQVAIVCPTTLLARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAA 699
            KTEVA+RA F    +GKQVA++ PTT+L +QHY T K+RF  +P+++  L+R  T  E  
Sbjct: 638  KTEVAVRAIFKAVTAGKQVALLAPTTILTQQHYHTLKERFAPYPIQIGLLNRFRTASERQ 697

Query: 700  ETREGLANGQFEIVVGTHAILSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLT 759
              ++ LA G+ ++VVGTH +LSK   F+DLGL++VDEEQ FGV  KEK+K L+  V +LT
Sbjct: 698  NIQQRLATGELDVVVGTHQLLSKGTQFRDLGLLVVDEEQRFGVNQKEKIKALKTQVDVLT 757

Query: 760  LTATPIPRTLQMALSGIREMSIIATPPVDRLAVRTYISPFDPVTLREALLREKYRGGQSY 819
            L+ATPIPRTL MALSG+REMS+I TPP  R  ++T++ P+D   +R A+ +E  RGGQ +
Sbjct: 758  LSATPIPRTLYMALSGVREMSLITTPPPSRRPIKTHLMPYDLEAVRTAISQEIDRGGQVF 817

Query: 820  YVVPRIKDLEDIEKFLRTQVPEVKFVVGHGQMAATQLEDVMTAFYEGQYDVLLATTIVES 879
            YVVPR++ +E I   L+  +P ++  V HGQM   +LE  M AF   + DV++ TTI+ES
Sbjct: 818  YVVPRVEGIEAIATRLQEMLPSLRIAVAHGQMPEGELEATMLAFNNNEADVMICTTIIES 877

Query: 880  GLDIPSANTLIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTTPVEKSLTPSAEKRLQVL 939
            GLDIP  NT+++  A  FGL+QLYQ+RGRVGR+  +A+A+L  P E  L+  A +RL+ +
Sbjct: 878  GLDIPRVNTILIEDAQRFGLSQLYQLRGRVGRAGIQAHAWLFYPGETVLSDQARQRLRAI 937

Query: 940  QSLDSLGAGFQLASHDLDQRGGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELRQRQGQE 999
            Q    LG+G+QLA  DL+ RG GNLLG EQSG ++ IG +LY +ML++++ E+R   GQ+
Sbjct: 938  QEFTQLGSGYQLAMRDLEIRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLQEIR---GQD 994

Query: 1000 ALLEDRGWSPQINTGAAVMIPDDYVPDLNVRLSLYRRLSEAEQAADREALAAEMIDRFGP 1059
                D     QI+      IP DY+PD++ ++S YR ++ A+  AD   +AA+  DR+G 
Sbjct: 995  IPQVD---DTQIDLSLTAFIPADYIPDIDAKMSAYRAVASAQTPADLLQIAADWSDRYGS 1051

Query: 1060 LPPETDSLLKVVAIKGLCREANVAKI 1085
            LP     LL+V+ +K + +    A+I
Sbjct: 1052 LPASAQQLLRVMELKQVAKSLGFARI 1077