Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor Mfd from Caulobacter crescentus NA1000

Subject, 1172 a.a., transcription-repair coupling factor from Rhodopseudomonas palustris CGA009

 Score = 1235 bits (3196), Expect = 0.0
 Identities = 633/1155 (54%), Positives = 825/1155 (71%), Gaps = 20/1155 (1%)

Query: 15   LTLAGAPEGFDALVMADIARARGGLT-------AFVARDTARAGAFIDALKFFAPEIEAV 67
            LT A   EG + L++AD+ARA              + RD  R      +L+FFAP++E +
Sbjct: 18   LTFANVAEGAEGLIIADLARAVAAKPKAPAVSLTVICRDGPRMQQLARSLEFFAPDLEVL 77

Query: 68   LFPSWDCLPYDRIGPSSGVSATRMATLSRLARGLGESKAAILVIAAPALLQRVPTKEVLL 127
             FP+WDC PYDR+ P +G+ A R+ TL++L+R  G  K  I++    A +QRVP +E++ 
Sbjct: 78   QFPAWDCQPYDRVSPHAGILAQRVTTLAKLSRLTGSDKPLIVLTTVNAAVQRVPVREIIA 137

Query: 128  RASYAAKVGANVDIKDLERYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAAEEPVRLDL 187
              + +   G  V +  +  +   NGY+RASTV E GE+A+RGG++D++P   ++PVR D 
Sbjct: 138  AQALSVAPGNVVPMDSIVAWLEHNGYSRASTVREAGEYAVRGGILDLFPAGLDQPVRFDF 197

Query: 188  FGDTLESIRAFDPETQRSTKQLKEIDLLPVSEALLDADGISRFRKGYVAEFGAPG-DDAL 246
            FGD LESIR FD ETQR+   ++ +DL+PVSE  L  + I RFR GYVA FGAP  DD L
Sbjct: 198  FGDQLESIRTFDAETQRTLHTMRGLDLVPVSEFQLVTETIRRFRMGYVAAFGAPHPDDQL 257

Query: 247  YAAVSEGGRRAGLEHWLPLFYERMATLFDYLPAGALIGVDNQATEARDERLAMIQDAYDA 306
            YAAVSEG R  G+EHWLPLF ERM TLFDYL  G  + ++ Q+ +A  ER   I D YDA
Sbjct: 258  YAAVSEGRRHPGMEHWLPLFQERMDTLFDYLK-GTPVAIEPQSEDAARERFKQIADYYDA 316

Query: 307  RASADRK----SAYRPLAPEALYLTAEEWERELSDRTHRRFTPFQ--PQGLDVIDLGAKL 360
            R  A  +    + Y+PL P+ LYLT  EW   L      R TPF       DVID GA+ 
Sbjct: 317  RREAMEQPGSGAIYKPLPPDRLYLTDSEWTARLEGVALARLTPFALPDDTSDVIDAGARA 376

Query: 361  GRVFAAERAQDSVNLFEATADHAKALAAQGKRVLFASWSEGSSERLGTMLADHGLKKIPY 420
            GR FA ERA  +VN+FE    H  AL A  K+V+ A WSEGS +R+ +ML DH L  +  
Sbjct: 377  GRNFAPERADSNVNVFETLVAHVYALQAARKKVVIALWSEGSRDRMASMLKDHKLVALTS 436

Query: 421  AGYWQAAKANDPKVPQRVVLPLDHGFETDSLAVISETDILGDRLARPRK-KRRAANFLAE 479
               W+  +A         V+ L+ GFETD+ AVI+E D+LGDRL R RK  ++  NF++E
Sbjct: 437  VNSWRTVQATPRNETMLAVVGLESGFETDAFAVITEQDVLGDRLVRQRKASKKLDNFISE 496

Query: 480  ASALTPGDLVVHIDHGIGRYEGLKTLDVQGAPHDCLDLLYGGEAKLYLPVENIDLLTRYG 539
             ++L+ GD+VVH++HGIGR+ GL+TL+V GAPHDC++L Y  + KL+LPVENI+LL+RYG
Sbjct: 497  VTSLSTGDIVVHVEHGIGRFVGLQTLEVGGAPHDCVELHYANDTKLFLPVENIELLSRYG 556

Query: 540  AADAENVQLDKLGGAAWQGRKAKAKERLRVMAEGLIQIAAARQLKTVEETDPPSGVFDEF 599
            + D  +V+LDKLGG+ WQ RKAK K R+R +A  LI++AA R L+   +      ++DEF
Sbjct: 557  S-DGTSVELDKLGGSGWQARKAKLKNRIRQIAGELIKVAAERHLREAPKLPIQPQLYDEF 615

Query: 600  CARFPYEETDDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQVA 659
            CARFPY+ET+DQL+AI+  L DL  G PMDRL+CGDVGFGKTEVALRAAF VA+ GKQVA
Sbjct: 616  CARFPYDETEDQLAAINAALGDLEKGTPMDRLVCGDVGFGKTEVALRAAFAVALDGKQVA 675

Query: 660  IVCPTTLLARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETREGLANGQFEIVVGTHAI 719
            +V PTTLLARQH KTF +RF+G+PV V + SRLV+ KE ++ ++G+A+G  +IVVGTHA+
Sbjct: 676  VVVPTTLLARQHAKTFTERFRGFPVNVGQASRLVSAKELSQVKKGIADGTTDIVVGTHAL 735

Query: 720  LSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIREM 779
            L K + FKDLGLVIVDEEQHFGV HKEKLK+LR++VH+LTL+ATPIPRTLQ+A++G+R++
Sbjct: 736  LGKSIKFKDLGLVIVDEEQHFGVTHKEKLKQLRSEVHVLTLSATPIPRTLQLAMTGVRDL 795

Query: 780  SIIATPPVDRLAVRTYISPFDPVTLREALLREKYRGGQSYYVVPRIKDLEDIEKFLRTQV 839
            SIIA+PPVDRLAVRT+++P DP+ +REALLRE+YRGGQ++YVVPRI DL +++ FL   V
Sbjct: 796  SIIASPPVDRLAVRTFVAPHDPLMIREALLRERYRGGQAFYVVPRIDDLAEVKDFLDKHV 855

Query: 840  PEVKFVVGHGQMAATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANTLIVHRADMFGL 899
            PE+K  V HGQM    +ED+M+AFY+G++D+LL+TTIVESGLDIP+ANTLIVHRADMFGL
Sbjct: 856  PEMKVAVAHGQMPPAVIEDIMSAFYDGKFDILLSTTIVESGLDIPNANTLIVHRADMFGL 915

Query: 900  AQLYQIRGRVGRSKARAYAYLTTPVEKSLTPSAEKRLQVLQSLDSLGAGFQLASHDLDQR 959
            AQLYQ+RGRVGRSK RAYA  T P + ++T  AE+RL+VLQSL++LGAGFQLASHDLD R
Sbjct: 916  AQLYQLRGRVGRSKLRAYALFTLP-QHNITAQAERRLKVLQSLETLGAGFQLASHDLDIR 974

Query: 960  GGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELRQRQGQEALLEDRGWSPQINTGAAVMI 1019
            G GNLLG+EQSGHIKE+G ELYQQMLE+A+  L+     E + +   WSPQI  G  V+I
Sbjct: 975  GAGNLLGEEQSGHIKEVGFELYQQMLEEAITNLKAGIVDEPVAD--RWSPQITIGMPVLI 1032

Query: 1020 PDDYVPDLNVRLSLYRRLSEAEQAADREALAAEMIDRFGPLPPETDSLLKVVAIKGLCRE 1079
            PDD+V DL+VRLSLYRRL++ +   + +  AAE+ DRFGPLP E   L K+ AIK  CR 
Sbjct: 1033 PDDFVADLSVRLSLYRRLADLDTDEEIDNFAAELRDRFGPLPDEVRYLFKIAAIKAYCRR 1092

Query: 1080 ANVAKIDVGPKGAVASFRGDSYANPLGLMQHVAKNSLIWKVRPDQKVVIKGEWDTPAQRL 1139
            ANV K+D GPKG V +FR +++A P  L+  + ++    KVRPD KVV    W+TP +RL
Sbjct: 1093 ANVEKVDAGPKGVVITFRDNAFAQPDKLVFFIKRHGDAAKVRPDMKVVFFQVWETPEERL 1152

Query: 1140 DAAEKILTVLAKLAK 1154
                 IL  LA LA+
Sbjct: 1153 MGTTDILKQLADLAE 1167