Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor Mfd from Caulobacter crescentus NA1000

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas fluorescens SBW25-INTG

 Score =  764 bits (1973), Expect = 0.0
 Identities = 451/1111 (40%), Positives = 639/1111 (57%), Gaps = 30/1111 (2%)

Query: 11   AAGGLTLAGAPEGFDALVMADIARARGGLTAFVARDTARAGAFIDALKFFAPEIEAVLFP 70
            AAG       P    +L +A+ A A    T  +  D+  A      L FFAP++  + FP
Sbjct: 12   AAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFP 71

Query: 71   SWDCLPYDRIGPSSGVSATRMATLSRLARGLGESKAAILVIAAPALLQRVPTKEVLLRAS 130
             W+ LPYD   P   + + R+A+L RL     E    +LV+     L R+   + LL +S
Sbjct: 72   DWETLPYDLFSPHQDIISQRIASLYRLP----ELAHGVLVVPITTALHRLAPTKFLLGSS 127

Query: 131  YAAKVGANVDIKDLERYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAAEEPVRLDLFGD 190
                +G  +D++ +      +GY    TV E GEFA+RG +ID++P  ++ P R+DLF D
Sbjct: 128  LVLDIGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDD 187

Query: 191  TLESIRAFDPETQRSTKQLKEIDLLPVSEALLDADGISRFRKGYVAEFGAPGDDA-LYAA 249
             +E++R FDPE QRS  ++  I LLP  E  L  D ++RF+  +   F        ++  
Sbjct: 188  EIETLRTFDPENQRSIDKVDSIKLLPAREFPLQKDAVTRFKARFRERFDVDFRRCPIFQD 247

Query: 250  VSEGGRRAGLEHWLPLFYERMATLFDYLPAGALIGVDNQATEARDERLAMIQDAYDARAS 309
            +S G   AG+E++LPLF++  +TLFDYLP    +       +A +     +++ Y+ R  
Sbjct: 248  LSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEER-- 305

Query: 310  ADRKSAYRPLAPEA-LYLTAEEWERELSDRTHRRFTPFQPQGLDVIDLGAKLGRVFAAER 368
              R    RPL P A L+L  E+    L +       P        +D G+   R F A  
Sbjct: 306  --RVDPSRPLLPPAELFLPVEDCFARLKN------WPRVVASQQDVDAGSGRER-FPAGT 356

Query: 369  AQDSVNLFEATADHAKALAAQGK---RVLFASWSEGSSERLGTMLADHGLKKIPYAGYWQ 425
              D     +AT          G    RVLF + S G  E L  +L    L+      +  
Sbjct: 357  LPDLAIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPD 416

Query: 426  AAKANDPKVPQRVVLPLDHGFETD--SLAVISETDILGDRLA--RPRKKRRAAN---FLA 478
              K+ +       + PLD G   D  +LA+I+E+ + G R+   R R+KR  AN    + 
Sbjct: 417  FVKSKERLAI--TIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIK 474

Query: 479  EASALTPGDLVVHIDHGIGRYEGLKTLDVQGAPHDCLDLLYGGEAKLYLPVENIDLLTRY 538
              + L  G  VVHIDHG+GRY GL+TL++     + L + Y   AKLY+PV ++ L+ RY
Sbjct: 475  NLTELREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVASLHLIARY 534

Query: 539  GAADAENVQLDKLGGAAWQGRKAKAKERLRVMAEGLIQIAAARQLKTVEETDPPSGVFDE 598
              +D     L +LG   WQ  K KA E++R +A  L+ I A R  +       P   +  
Sbjct: 535  TGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYAT 594

Query: 599  FCARFPYEETDDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRAAFVVAMSGKQV 658
            F A F +EET DQ + I  V  D+ + KPMDRL+CGDVGFGKTEVA+RAAF+    GKQV
Sbjct: 595  FSAGFAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQV 654

Query: 659  AIVCPTTLLARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETREGLANGQFEIVVGTHA 718
            AI+ PTTLLA+QHY +F+DRF  WPV V  +SR  + KE       LA G+ +IV+GTH 
Sbjct: 655  AILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHK 714

Query: 719  ILSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPRTLQMALSGIRE 778
            +LS  V  K+LGLVI+DEE  FGV+ KE+LK LR++V +LTLTATPIPRTL MA+SG+R+
Sbjct: 715  LLSDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRD 774

Query: 779  MSIIATPPVDRLAVRTYISPFDPVTLREALLREKYRGGQSYYVVPRIKDLEDIEKFLRTQ 838
            +SIIATPP  RL+VRT++   +  T++EALLRE  RGGQ YY+   +K +E     L   
Sbjct: 775  LSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAEL 834

Query: 839  VPEVKFVVGHGQMAATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSANTLIVHRADMFG 898
            VPE +  +GHGQM    LE VM+ FY  +++VL+A+TI+E+G+D+PSANT+I+ RAD FG
Sbjct: 835  VPEARIAIGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFG 894

Query: 899  LAQLYQIRGRVGRSKARAYAYLTTPVEKSLTPSAEKRLQVLQSLDSLGAGFQLASHDLDQ 958
            LAQL+Q+RGRVGRS  +AYAYL TP  + +T  AEKRL+ + +   LGAGF LA++DL+ 
Sbjct: 895  LAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEI 954

Query: 959  RGGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELRQRQGQEALLEDRGWSPQINTGAAVM 1018
            RG G LLGD QSG I+ +G  LY +MLE AV  +R+ + Q  L +  G  P+IN     +
Sbjct: 955  RGAGELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGE-QPNLDQPLGGGPEINLRLPAL 1013

Query: 1019 IPDDYVPDLNVRLSLYRRLSEAEQAADREALAAEMIDRFGPLPPETDSLLKVVAIKGLCR 1078
            IP+DY+PD++ RL LY+R++ A      + L  EMIDRFG LP  T +L+++  +K    
Sbjct: 1014 IPEDYLPDVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAE 1073

Query: 1079 EANVAKIDVGPKGAVASFRGDSYANPLGLMQ 1109
            +  + K+D GP+G    F   +  +PL L++
Sbjct: 1074 QLGIKKVDAGPQGGRIEFEAQTPVDPLVLIR 1104