Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor Mfd from Caulobacter crescentus NA1000

Subject, 1153 a.a., transcription-repair coupling factor from Cupriavidus basilensis FW507-4G11

 Score =  737 bits (1903), Expect = 0.0
 Identities = 451/1167 (38%), Positives = 648/1167 (55%), Gaps = 52/1167 (4%)

Query: 8    IAKAAGGLTLAGAPEGFDALVMADIA---RARGGLTAFVARDTARAGAFIDALKFFAPEI 64
            + KA    T++G P   DAL +A  A   R R  + A V  +   A    + + +FAP +
Sbjct: 15   LVKAGQRYTVSGLPGSADALALAAYASQHRERVPMLAVVCANAVDAQRLAEEIPWFAPSL 74

Query: 65   EAVLFPSWDCLPYDRIGPSSGVSATRMATLSRLARGLGESKAAILVIAAPALLQRVPTKE 124
               L P W+ LPYD   P   + + R+ATL  +  G    +  I+++ A   L R+    
Sbjct: 75   RVRLLPDWETLPYDSFSPHQDLVSERLATLHDIQGG----QCDIMLVPAQTALYRLAPPA 130

Query: 125  VLLRASYAAKVGANVDIKDLERYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAAEEPVR 184
             L   ++  K G  +D   L+  F + GY   S V   GE+++RGG+ID++P  +  P R
Sbjct: 131  FLAAYTFFFKQGEKLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPLPYR 190

Query: 185  LDLFGDTLESIRAFDPETQRSTKQLKEIDLLPVSEALLDADGISRFRKGYVAEF-GAPGD 243
            +DLFG+ +E+IRAFDP+TQRS   +KE+ LLP  E  LD    + FR  +   F G P  
Sbjct: 191  IDLFGNEIETIRAFDPDTQRSLYPVKEVRLLPGREFPLDDAARTAFRGRWRELFEGDPSK 250

Query: 244  DALYAAVSEGGRRAGLEHWLPLFYERMATLFDYLPAGALIGVDNQATEARDERLAMIQDA 303
              +Y  +  G   AG+E++LPLF+E  AT+FDYLPA + +       +A     A     
Sbjct: 251  STIYKDIGNGVPSAGIEYYLPLFFESSATVFDYLPANSQLAFAGDVPDAIRRFWADTTQR 310

Query: 304  YDARASADRKSAYRPLAPEALYLTAEEWERELSDRTHRRFTPFQP------QGL---DVI 354
            Y+      R    RPL P A    +EE          + FT  +P      QG    D +
Sbjct: 311  YNFM----RHDRERPLLPPAALFLSEE----------QFFTGAKPLARLVLQGTATGDTV 356

Query: 355  DLGAKLGRVFAAERAQDSVNLFEATADHAKALAAQGKRVLFASWSEGSSERLGTMLADHG 414
             L   L  V    RA+D +   EA       L  + +RVL  + S G  E L  +  + G
Sbjct: 357  PLAESLPDVSVNRRAEDPLVNLEAL------LLKKDRRVLMCADSAGRRETLLQLFGESG 410

Query: 415  LKKIPYAGYWQAAKANDPKVPQRVVLPLDHGFETDS------LAVISETDILGDRLARP- 467
            L+  P   Y  A  A D      VV PL  GF   S      LA ++E ++      R  
Sbjct: 411  LRPQPIDDY-AAFLAGDSHF-SIVVAPLQSGFAVPSAQGIEPLAFVTEAELYAGTARRTG 468

Query: 468  -RKKRRAA---NFLAEASALTPGDLVVHIDHGIGRYEGLKTLDVQGAPHDCLDLLYGGEA 523
             RK+ +A+   + + + + L  GD VVH +HGIGRY+GL +LD+     + L L Y   +
Sbjct: 469  RRKQEQASAVDSMVRDLAELKIGDPVVHSEHGIGRYQGLVSLDLGQGEEEFLHLDYEKGS 528

Query: 524  KLYLPVENIDLLTRYGAADAENVQLDKLGGAAWQGRKAKAKERLRVMAEGLIQIAAARQL 583
            KLY+PV  + +++RY  AD +   L  LG   W   K +A +++R  A  L+ + A R L
Sbjct: 529  KLYVPVHQLHVISRYSGADPDTAPLHSLGSGQWDRAKRRAAQQIRDTAAELLNLYARRAL 588

Query: 584  KTVEETDPPSGVFDEFCARFPYEETDDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEV 643
            +     +     +++F   F +EET DQ +AI  V+ D++SGKPMDRL+CGDVGFGKTEV
Sbjct: 589  RQGHAFELTPKDYEKFAESFGFEETPDQAAAIAAVIADMTSGKPMDRLVCGDVGFGKTEV 648

Query: 644  ALRAAFVVAMSGKQVAIVCPTTLLARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETRE 703
            ALRAAFV  M GKQVAI+ PTTLLA QH++   DRF  WPV++  LSR  T KE     +
Sbjct: 649  ALRAAFVAVMGGKQVAILAPTTLLAEQHFQNLSDRFAEWPVRIVELSRFKTKKEIDGAIK 708

Query: 704  GLANGQFEIVVGTHAILSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTAT 763
             + +G  +IV+GTH +LS  V F+ LGLV++DEE  FGV+ KE LK LRA+V +LTLTAT
Sbjct: 709  QINDGTADIVIGTHKMLSDDVKFQRLGLVVIDEEHRFGVRQKEMLKTLRAEVDVLTLTAT 768

Query: 764  PIPRTLQMALSGIREMSIIATPPVDRLAVRTYISPFDPVTLREALLREKYRGGQSYYVVP 823
            PIPRTL MAL G+R+ S+IAT P  RLA++T++   +   +REA+LRE  RGGQ Y++  
Sbjct: 769  PIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVVREAILRELKRGGQVYFLHN 828

Query: 824  RIKDLEDIEKFLRTQVPEVKFVVGHGQMAATQLEDVMTAFYEGQYDVLLATTIVESGLDI 883
             +  +E+    L   VPE +  V HGQM   +LE VM  F   + ++LL TTI+E+G+D+
Sbjct: 829  EVDTIENKRAKLAELVPEARIAVAHGQMHERELERVMRDFVARRDNILLCTTIIETGIDV 888

Query: 884  PSANTLIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTTPVEKSLTPSAEKRLQVLQSLD 943
            P+ANT+++HRAD FGLAQL+Q+RGRVGRS  +AYAY+     + L+  A++RL+ +Q ++
Sbjct: 889  PTANTILIHRADKFGLAQLHQLRGRVGRSHHQAYAYMLVHDVEGLSKLAQRRLEAIQQME 948

Query: 944  SLGAGFQLASHDLDQRGGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELRQRQGQEALLE 1003
             LG+GF LA HDL+ RG G +LGD+QSG I EIG +LY  ML  AV  L+  + +  L+ 
Sbjct: 949  ELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTDMLNAAVKSLKAGK-EPDLMA 1007

Query: 1004 DRGWSPQINTGAAVMIPDDYVPDLNVRLSLYRRLSEAEQAADREALAAEMIDRFGPLPPE 1063
                + +IN G   ++P DY  D++ RLSLY+RL+  E A   + +  E+IDRFG LPP+
Sbjct: 1008 PLAVTTEINLGTPALLPSDYCTDVHERLSLYKRLANCEAAERVDDIQEELIDRFGRLPPQ 1067

Query: 1064 TDSLLKVVAIKGLCREANVAKIDVGPKGAVASFRGDSYANPLGLMQHVAKNSLIWKVRPD 1123
              +L++   ++       V KID         F  +   + + ++  V KN  I K+   
Sbjct: 1068 AQALIETHRLRIAAVPLGVRKIDASDAAISMQFLPNPPIDAMKIIDLVQKNRHI-KLAGQ 1126

Query: 1124 QKVVIKGEWDTPAQRLDAAEKILTVLA 1150
             K+ I+ +    A R    +  L  LA
Sbjct: 1127 DKLRIEAKMPDVAVRAQTIKHTLRQLA 1153