Pairwise Alignments

Query, 1155 a.a., transcription-repair coupling factor Mfd from Caulobacter crescentus NA1000

Subject, 1160 a.a., helicase from Burkholderia phytofirmans PsJN

 Score =  747 bits (1929), Expect = 0.0
 Identities = 457/1168 (39%), Positives = 654/1168 (55%), Gaps = 51/1168 (4%)

Query: 8    IAKAAGGLTLAGAPEGFDALVMADIA---RARGGLTAFVARDTARAGAFIDALKFFAPEI 64
            + KA       G     DAL++A      R +  L A V      A      + FFAPE 
Sbjct: 16   LVKAGQRFAFDGTHGSSDALLIARYHLAYREKVPLLAVVCESAVDAQRLAQEIGFFAPEA 75

Query: 65   EAVLFPSWDCLPYDRIGPSSGVSATRMATLSRLARGLGESKAAILVIAAPALLQRVPTKE 124
               L P W+ LPYD   P   + + R+ATL      LGE +  IL++ A   L R+P   
Sbjct: 76   RVRLLPDWETLPYDTFSPHQDLVSERLATL----HDLGEGRCDILLVPATTALYRMPPAS 131

Query: 125  VLLRASYAAKVGANVDIKDLERYFAVNGYTRASTVSERGEFAIRGGVIDVYPPAAEEPVR 184
             L   +++   G  +D   ++    + GY   S V   GE+ +RG ++D+YP  +  P R
Sbjct: 132  FLAAYTFSFAQGERLDEARIKAQLTLAGYEHVSQVVRPGEYCVRGSLLDLYPMGSPLPYR 191

Query: 185  LDLFGDTLESIRAFDPETQRSTKQLKEIDLLPVSEALLDADGISRFRKGYVAEF-GAPGD 243
            +DLF D ++SIRAFDP+TQRS   +K++ LLP  E   D    + FR  +   F G P  
Sbjct: 192  IDLFDDQVDSIRAFDPDTQRSLYPVKDVRLLPGREFPFDEAARTAFRSRWRETFEGDPSR 251

Query: 244  DALYAAVSEGGRRAGLEHWLPLFYERMATLFDYLPAGALIGVDNQATEARDERLAMIQDA 303
             A+Y  +  G   AG+E++LPLF+E  ATLF YLP GA +                  DA
Sbjct: 252  AAIYKDIGNGVPSAGIEYYLPLFFEDTATLFHYLPEGAQLAFVGDL------------DA 299

Query: 304  YDARASADRKSAY--------RP-LAPEALYLTAEEWERELSDRTHRRFTPFQPQGLDVI 354
               R + D K  Y        RP L P+ L+L+ E++   L+    R   P    G    
Sbjct: 300  AIRRFTNDTKQRYNFLSHDRDRPILEPQRLFLSDEDFFT-LAKPFARLSLPANAGG---- 354

Query: 355  DLGAKLGRVFAAERAQDSVNLFEATADHAKALAAQGKRVLFASWSEGSSERLGTMLADHG 414
                 L  +     A+D V    A  D          RVLFA+ S G  E L  +LAD+ 
Sbjct: 355  GWSTPLPNLAIDRHAEDPVAGLRAYLDTTP------NRVLFAAESAGRRETLLQLLADNH 408

Query: 415  LKKIPYAGYWQAAKANDPKVPQRVVLPLDHGFET--DSLAVISETDILGD--RLARPRKK 470
            L+ +    + Q    +D +    V  PL +GF    D +A+I+ET++ G   R A  R++
Sbjct: 409  LRPVSSDSF-QDWLTSDERFSLGVA-PLANGFAVPVDGIAIITETELYGPLARRAGRRRQ 466

Query: 471  RRAAN---FLAEASALTPGDLVVHIDHGIGRYEGLKTLDVQGAPHDCLDLLYGGEAKLYL 527
             +A+N    + + S L  GD VVH  HGIGRY GL T+D+     + L L Y G++KLY+
Sbjct: 467  EQASNVDSMVRDLSELKVGDPVVHSQHGIGRYMGLVTMDLGEGETEFLHLEYAGDSKLYV 526

Query: 528  PVENIDLLTRYGAADAENVQLDKLGGAAWQGRKAKAKERLRVMAEGLIQIAAARQLKTVE 587
            PV  + +++RY  AD E+  L  LG   W+  K KA +++R  A  L+ + A R L+   
Sbjct: 527  PVAQLHVISRYSGADPESAPLHSLGSGQWEKAKRKAAQQIRDTAAELLNLYARRALRQGH 586

Query: 588  ETDPPSGVFDEFCARFPYEETDDQLSAIHDVLEDLSSGKPMDRLICGDVGFGKTEVALRA 647
                    + +F   F +EET DQ +AI  V+ D++SGKPMDRL+CGDVGFGKTEVALRA
Sbjct: 587  AFALEPKDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRA 646

Query: 648  AFVVAMSGKQVAIVCPTTLLARQHYKTFKDRFQGWPVKVTRLSRLVTGKEAAETREGLAN 707
            AF+  M GKQVA++ PTTLLA QH +TF DRF  WPV++  LSR  + KE +   + +  
Sbjct: 647  AFIAVMGGKQVALLSPTTLLAEQHTQTFSDRFSDWPVRIAELSRFKSTKEVSAAIQQINE 706

Query: 708  GQFEIVVGTHAILSKQVSFKDLGLVIVDEEQHFGVKHKEKLKELRADVHMLTLTATPIPR 767
            G  +IV+GTH +LS  V FK LGLVI+DEE  FGV+ KE LK LRA+V +LTLTATPIPR
Sbjct: 707  GTVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPR 766

Query: 768  TLQMALSGIREMSIIATPPVDRLAVRTYISPFDPVTLREALLREKYRGGQSYYVVPRIKD 827
            TL MAL G+R+ S+IAT P  RLA++T++   +   +REA+LRE  RGGQ Y++   ++ 
Sbjct: 767  TLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSVIREAMLRELKRGGQVYFLHNEVET 826

Query: 828  LEDIEKFLRTQVPEVKFVVGHGQMAATQLEDVMTAFYEGQYDVLLATTIVESGLDIPSAN 887
            +E+  + L   VPE +  V HGQM   +LE VM  F   + +VLL TTI+E+G+D+PSAN
Sbjct: 827  IENRRQMLEALVPEARIAVAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSAN 886

Query: 888  TLIVHRADMFGLAQLYQIRGRVGRSKARAYAYLTTPVEKSLTPSAEKRLQVLQSLDSLGA 947
            T+++HRAD FGLAQL+Q+RGRVGRS  +AY+YL     + LT  A++RL+ +Q ++ LG+
Sbjct: 887  TILIHRADKFGLAQLHQLRGRVGRSHHQAYSYLLVHDPQGLTKQAQRRLEAIQQMEELGS 946

Query: 948  GFQLASHDLDQRGGGNLLGDEQSGHIKEIGVELYQQMLEDAVAELRQRQGQEALLEDRGW 1007
            GF LA HDL+ RG G +LGD+QSG I EIG +LY  ML DAV  L++ + +  L      
Sbjct: 947  GFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTDMLNDAVKALKEGK-EPDLTAPLAA 1005

Query: 1008 SPQINTGAAVMIPDDYVPDLNVRLSLYRRLSEAEQAADREALAAEMIDRFGPLPPETDSL 1067
            + +IN  A+ ++P DY  D+  RLSLY+RL+  E     + +  E+IDRFG LPP+  +L
Sbjct: 1006 TTEINLHASAILPADYCGDVQERLSLYKRLANCEHNDSIDGIQEELIDRFGKLPPQAHAL 1065

Query: 1068 LKVVAIKGLCREANVAKIDVGPKGAVASFRGDSYANPLGLMQHVAKNSLIWKVRPDQKVV 1127
            ++   ++   +   ++KID G       F  +   + + +++ V K+  I K+    K+ 
Sbjct: 1066 VETHRLRLAAKPLGISKIDAGEAVIGLQFIPNPPIDAMRIIEMVQKHKHI-KLAGQDKLR 1124

Query: 1128 IKGEWDTPAQRLDAAEKILTVLAKLAKG 1155
            I+      A R+   ++ L  L   ++G
Sbjct: 1125 IETRSPDLAVRVATVKETLRALGTPSRG 1152