Pairwise Alignments

Query, 208 a.a., DNA integration/recombination/inversion protein from Caulobacter crescentus NA1000

Subject, 302 a.a., Site-specific recombinase XerD from Sphingomonas koreensis DSMZ 15582

 Score = 46.6 bits (109), Expect = 5e-10
 Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 9/162 (5%)

Query: 34  IRQQLKANGRVRDLAMFNCAIDAKLRGCDLVKLRVSDVAPGGSLRARATIIQQKTGQPVP 93
           +++ L A   ++  A  + A  A LR  ++  L+VSDV    S R    I + K G+   
Sbjct: 116 VKRLLDATTCLKHQAALSVAYGAGLRVAEVSALKVSDV---DSKRMVLRIERGKGGRYRN 172

Query: 94  FEITEPTRDALAVWLKVRGRRN----DDWLFSSRSRPGDHVSTRQYARLVDKWVSMIELE 149
             + E     L  W +   ++     D WLF  ++     +STRQ  R+V +     ++ 
Sbjct: 173 AMLPEGLLLLLRDWWRAARQQGIMLPDGWLFPGQNATVP-ISTRQLYRVVVQAAEAADIA 231

Query: 150 PRAYGTHSLRRTKVALIYKKTGNLRACQLLLGHRKLESTVRY 191
            R  G H+LR +    + +   ++R  Q LLGH KL +T  Y
Sbjct: 232 KRV-GPHTLRHSFATHLLEDGVDIRVIQALLGHAKLNTTAFY 272