Pairwise Alignments

Query, 892 a.a., osmosensitive K+ channel histidine kinase kdpD from Caulobacter crescentus NA1000

Subject, 348 a.a., sensor histidine kinase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  145 bits (367), Expect = 3e-39
 Identities = 89/247 (36%), Positives = 139/247 (56%), Gaps = 7/247 (2%)

Query: 638 ALERSQLAAEAVETETLRRADRFRSALMNSVSHDLRTPLSTVLGASTTLIDYGDKLAKPV 697
           AL  S+LA      +      + R++++ SVSHDLRTPL+T++G  TTL +Y  KL+   
Sbjct: 105 ALTSSKLAKHYRRQQDALEQAQLRNSILLSVSHDLRTPLATIIGTLTTLKEYQPKLSPAQ 164

Query: 698 REDLVVSIREEAERLNRYVANLLDMTRIEGGALRLRTDWIDVRDVLNAAADRVSRRLGGR 757
            E+L+ S   E+ RL++Y+ NLL   +++ GAL+   D  ++R+VL     R        
Sbjct: 165 TEELIDSAAAESHRLHQYIENLLQANKLQHGALKFSLDEANIREVLQRTIARFQTEQPRI 224

Query: 758 ELARDFPRELSLIQADASLLEQVVVNVLENAIAYSPPEARIEMAAYEDRANVVISIEDEG 817
           ++  +   EL  +   +SL+EQ + NVL+NA+ YSP    + ++ Y  +  + I I+D+G
Sbjct: 225 QIQSE--PELPSLMICSSLIEQAIFNVLDNALHYSPATQPVTVSLYRHQHMLRIDIQDQG 282

Query: 818 RGIPTSELERVFDKFRRMEEPSDRTQGAGLGLSIAKGFIDALGGRIAAASPIHDGRGTRI 877
           +GI  S+   +F+ F R    +D   GAGLGL +AKG I A  G I+A    H   G+ I
Sbjct: 283 KGIAPSQTGAIFELFYRQHPTTD--GGAGLGLPVAKGIITAHNGTISAEKVAH---GSLI 337

Query: 878 LISLPKT 884
            I+LP T
Sbjct: 338 RIALPIT 344



 Score = 38.5 bits (88), Expect = 7e-07
 Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 403 ALFIAAATLAAWGLDV-AFNRVDLGMIFLTAVLAAGVLHGLRPALAAATVAFLVYNCLFL 461
           A+ +    + ++ +DV + + + + +I   AV+   +      A   A    + +N LF 
Sbjct: 22  AMLLVVVLITSYFIDVFSGSAIAVLLILQLAVVVVALQCSANYAYFVAVFGAVSFNFLFT 81

Query: 462 EPRYSFVVGSPTDFITLVVFWAVALASGGLAGRVREQALGSQRRAAAVTTLLAAS 516
            PRYS  + +  D + L VF   AL S  LA   R Q    ++     + LL+ S
Sbjct: 82  APRYSLQMLNVEDIVNLTVFLLAALTSSKLAKHYRRQQDALEQAQLRNSILLSVS 136