Pairwise Alignments

Query, 783 a.a., NAD-dependent DNA ligase from Caulobacter crescentus NA1000

Subject, 681 a.a., DNA ligase (NAD(+)) (RefSeq) from Shewanella amazonensis SB2B

 Score =  466 bits (1198), Expect = e-135
 Identities = 259/565 (45%), Positives = 352/565 (62%), Gaps = 30/565 (5%)

Query: 10  TEAQAVEDLERLADLLATHDIAYHQEDNPTVSDAEYDALKRRNLDIETRFPHLVRDNSPS 69
           T  Q   +++RL   +  H+IAY+ +D P++ DAEYD L  +   +E  +P     +SP+
Sbjct: 10  TIMQVKAEIQRLTAEINRHNIAYYVQDAPSIPDAEYDRLMNQLKALEAEYPQFAEPDSPT 69

Query: 70  MRVGATRAEQFAPVEHGVPMLSLDNAFSNDEAIEFDARVRRFLRISPSETVAYTAEPKID 129
            RVG     +F  V H  PMLSLDNAF+ ++ + FD R+          +  Y AEPK+D
Sbjct: 70  QRVGGAALNKFEQVSHLKPMLSLDNAFNEEDFVAFDKRLT-----DKVGSQVYCAEPKLD 124

Query: 130 GLSASLRYEKGVLVQGATRGDGRVGEDVTANLRTIADIPHRLKGSGWPDVIEVRGEVYVE 189
           GL+ SL Y  GVL + ATRGDG VGED++ N+RTI  +P RL+G   P ++EVRGEV++ 
Sbjct: 125 GLAVSLIYRNGVLERAATRGDGAVGEDISVNMRTIKSVPLRLQGDDIPALVEVRGEVFMP 184

Query: 190 LAAFAAFNKAAEEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFFGYAWGLVSEG---- 245
            AAF A N  A   G + + NPRN AAGSLRQ+D KI+A+R L F+ YA G+V +     
Sbjct: 185 RAAFEALNDRARAKGDKLFVNPRNAAAGSLRQLDSKITAERSLAFYAYALGVVQDDNGAD 244

Query: 246 --FADSQWGALERLAEWGFVTTAPPAQRVLNAQGLLDI---YAQFEVLRPTLGFDIDGVV 300
              A +  G LERL  +G     P ++ V   +GL ++   YA     R  L F+IDGVV
Sbjct: 245 LVLAPTHKGQLERLTAFGL----PVSKEVKLCEGLAEVMAYYADILKRRDELAFEIDGVV 300

Query: 301 YKVDDLELQRRLGFVSRSPRWAIARKFPAQRARTVLEAIDLQVGRTGAITPVARLKPVTV 360
            KV+D+E Q++LGFV+R+PRWAIA KFPAQ   TVLE +D QVGRTGA+TPVARLKPV V
Sbjct: 301 IKVNDIEAQQQLGFVARAPRWAIAFKFPAQEEMTVLEGVDFQVGRTGAVTPVARLKPVFV 360

Query: 361 GGVSVTNATLHNGDEIARLDVRVGDTVVIQRAGDVIPQIVEVALDARPDPAPPPYEFPHV 420
           GGV+V+NATLHNGDEIARL V++GDTV+I+RAGDVIPQIV V  + RPD A     FP  
Sbjct: 361 GGVTVSNATLHNGDEIARLGVKIGDTVIIRRAGDVIPQIVAVVPERRPDEA-QDILFPDN 419

Query: 421 CPCPLQTPLAREVTASGQESVVRRCTGEFACPFQRVEHLRHFVSRRAFDIEGLGEKQLQA 480
           C      P+   +    +   V RC+G   C  QR E ++HF SR+A  I+G+G+K ++ 
Sbjct: 420 C------PVCGSLVERIEGEAVARCSGGLFCEAQRREAIKHFASRKAMYIDGMGDKVVEQ 473

Query: 481 FFEEGWITEPADIFKLARDAEKLAVLREREGYGETSVANLVKGIEARRTIGMDRMIYGLG 540
             ++  +  PAD+FKL  +  KL +L   E  G  S  NLV  IE  +T  + + +Y LG
Sbjct: 474 LIDKELVESPADLFKL--NVSKLTML---ERMGTKSATNLVAAIEEAKTTTLPKFLYALG 528

Query: 541 ARDIGETTSTVLARNFDRFEDLQAA 565
            R++GE T+  LA++F   E ++ A
Sbjct: 529 IREVGEATAANLAKHFRSLEAIRDA 553



 Score = 97.1 bits (240), Expect = 3e-24
 Identities = 64/153 (41%), Positives = 87/153 (56%), Gaps = 13/153 (8%)

Query: 631 AALAQRYGTWDAFADGLVAAASGAPGDDYLHLAAIDGVGPVAAQSLARFFAEDHNRQKVA 690
           A LA+ + + +A  D  V A           L  ++ VG V AQ +A FFA+ HN + + 
Sbjct: 538 ANLAKHFRSLEAIRDADVDA-----------LIQVEDVGTVVAQHVAHFFAQPHNLEVID 586

Query: 691 NLVAE-LDIQPVAKPKTDTA-VAGKTIVFTGSLEKMTRDEAKAQAEGLGAKVASSVSKKT 748
            L+A  ++   + KP  D   + G+T V TG+L  + R EAKA+ E LGAKVA SVSK T
Sbjct: 587 ALIAAGVNWPAIEKPSADAQPLLGQTWVLTGTLTSLGRTEAKAKLEALGAKVAGSVSKNT 646

Query: 749 DLVVAGPGAGSKLKTATDLGIQVMTEDEWLELV 781
             VVAG  AGSKL  A +LGI V+ E   +EL+
Sbjct: 647 HCVVAGEAAGSKLAKAQELGIPVLDEAGLIELI 679