Pairwise Alignments

Query, 783 a.a., NAD-dependent DNA ligase from Caulobacter crescentus NA1000

Subject, 808 a.a., DNA ligase, NAD-dependent (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  441 bits (1134), Expect = e-128
 Identities = 309/817 (37%), Positives = 406/817 (49%), Gaps = 135/817 (16%)

Query: 1   MSQIPVADLTEAQAVEDL-------------ERLADLLATHDIAYHQEDNPTVSDAEYDA 47
           +S +P A ++E  A +D              E L D L  H   Y+  D+  +SDAEYDA
Sbjct: 7   ISPVPPAPVSEPNAGQDAGQDAAPAHMAARAEALRDQLNYHSHRYYVLDDAEISDAEYDA 66

Query: 48  LKRRNLDIETRFPHLVRDNSPSMRVGATRAEQFAPVEHGVPMLSLDNAFSNDEAIEFDAR 107
           L R   DIE  +P L   +SP+ RVG T         H + M SLDNAFS   A E+D  
Sbjct: 67  LFRELQDIEAEWPSLRTPDSPTHRVGDTVVAALETQAHTLRMYSLDNAFS---AEEWDGF 123

Query: 108 VRRFLRISPSETVAYTAEPKIDGLSASLRYEKGVLVQGATRGDGRVGEDVTANLRTIADI 167
           ++R LR  P    A+  +PK+DGL+  + YE GV     TRGDG  GE VT  +RT+ ++
Sbjct: 124 IQRMLRAEPDAPTAFWCDPKMDGLALEVIYENGVFTTALTRGDGEKGEIVTTAMRTVRNL 183

Query: 168 PHRLKGSG-WPDVIEVRGEVYVELAAFAAFNKAAEEAGQRTYANPRNFAAGSLRQIDPKI 226
           P RL G G  P  +EVRGEV +  A F A N A   AG++ +ANPRN AAGS+RQ+D  +
Sbjct: 184 PLRLHGEGPHPARLEVRGEVVITRAEFDALNAARRGAGEKLFANPRNAAAGSVRQLDASV 243

Query: 227 SAQRPLRFFGYAWGLV------SEGFADSQWGALER----------LAEWGFVTTAPPAQ 270
           +A RPLRF  Y  G V      S+G A +  G   R          LA++GF  T P A+
Sbjct: 244 TAGRPLRFLAYGVGQVVWPAETSDGAASAAQGPEARWATHGQVMAALADYGF-GTPPDAR 302

Query: 271 RVLNAQGLLDIYAQFEVLRPTLGFDIDGVVYKVDDLELQRRLGFVSRSPRWAIARKFPAQ 330
           R      ++  Y      R  L FDIDGVV K+DDL  Q  LG+ +R+PRWAIA KFPA 
Sbjct: 303 RCETPAQVMAYYEDLGRRRSELPFDIDGVVAKLDDLSAQAALGYTARAPRWAIALKFPAH 362

Query: 331 RARTVLEAIDLQVGRTGAITPVARLKPVTVGGVSVTNATLHNGDEIARLDVRVGDTVVIQ 390
           +A T LE I +QVGRTG +TPVA L PV VGGV+V+ ATLHN DEI   D+RVGD VV+Q
Sbjct: 363 QATTRLEHIAIQVGRTGVLTPVAELAPVAVGGVTVSRATLHNEDEIRAKDLRVGDMVVVQ 422

Query: 391 RAGDVIPQIVEVALDARPDPAPPPYEFPHVCPCPLQTPLAREVTASGQESVVRRCTGEFA 450
           RAGDVIP++V   +D RP    P +EFP  CP    TP+ RE   +    V         
Sbjct: 423 RAGDVIPEVVRPLVDQRPASGLPEFEFPAECPV-CHTPVRREPGEAAWRCV------NVG 475

Query: 451 CPFQRVEHLRHFVSRRAFDIEGLGEKQLQAFFEEGWITEPADIFKLARDAEKLAVLRERE 510
           CP    + + HFVS+   DI+G+G + ++   + G +T PAD+F L +       L   E
Sbjct: 476 CPAVVRQSIIHFVSKAGLDIQGVGRRWVELLVDRGKVTSPADLFGLDKQ-----TLLAFE 530

Query: 511 GYGETSVANLVKGIEARRT-IGMDRMIYGLGARDIGETTSTVLARNFDRFEDLQAAAEAA 569
             G     N +   +  RT   ++R+I  LG R +GE T+  LA +   F DL A   A 
Sbjct: 531 RMGPKLAENFIAAFDTARTGATLNRLICALGIRHVGEQTARTLAAH---FADLDALGAAQ 587

Query: 570 ARALPGETYLELSTAPGVGPKALDMLVEAGKGGVVADPWPQTDDLELKIGHAVPKLTKPA 629
           A          L   P +GP+     V A      A+                       
Sbjct: 588 AET--------LQQLPDIGPE-----VAASIRAFFAN---------------------EG 613

Query: 630 RAALAQR---YGTWDAFADGLVAAASGAPGDDYLHLAAIDGVGPVAAQSLARFFAEDHNR 686
             AL +R    G W        A A+GAPG         +G GP+A              
Sbjct: 614 NRALLERLRGVGLWPVRPVRPEADAAGAPG---------EGSGPLA-------------- 650

Query: 687 QKVANLVAELDIQPVAKPKTDTAVAGKTIVFTGSLEKMTRDEAKAQAEGLGAKVASSVSK 746
                                    G  ++FTGSL  +TR +A+ +A   GA +  SVSK
Sbjct: 651 -------------------------GLRVLFTGSLTTLTRSDAERRAVAAGANILGSVSK 685

Query: 747 KTDLVVAGPGAGSKLKTATDLGIQVMTEDEWLELVAG 783
           K DL+V G   GSKL  AT LGI+V+ E E+L+L+ G
Sbjct: 686 KLDLLVVGDKPGSKLDKATKLGIRVLREQEFLDLLEG 722