Pairwise Alignments

Query, 783 a.a., NAD-dependent DNA ligase from Caulobacter crescentus NA1000

Subject, 741 a.a., DNA ligase, NAD-dependent (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  572 bits (1474), Expect = e-167
 Identities = 319/598 (53%), Positives = 404/598 (67%), Gaps = 25/598 (4%)

Query: 4   IPVADLTEAQAVEDLERLADLLATHDIAYHQEDNPTVSDAEYDALKRRNLDIETRFPHLV 63
           + V  L+EA A ++L RL++LLA  +  YH++D P++SDA+YDALK+RN  IE RFP L 
Sbjct: 40  VAVEALSEAAARKELARLSELLARANAEYHRDDAPSLSDADYDALKQRNAAIEARFPDLK 99

Query: 64  RDNSPSMRVGATRAEQFAPVEHGVPMLSLDNAFSNDEAIEFDARVRRFLRISPSETVAYT 123
           R +SPS +VGA  ++ F+ V H V MLSL NAFS+++  +FD R+RRFL ++    +AYT
Sbjct: 100 RGDSPSDQVGAAPSDTFSKVTHAVRMLSLANAFSDEDIRDFDTRIRRFLGLAEDAPLAYT 159

Query: 124 AEPKIDGLSASLRYEKGVLVQGATRGDGRVGEDVTANLRTIADIPHRLKGSGWPDVIEVR 183
           AEPKIDGLS SLRYE G LVQ ATRGDG VGE+VTAN RTI DIPHRL G+  P+V+EVR
Sbjct: 160 AEPKIDGLSLSLRYEHGTLVQAATRGDGAVGENVTANARTIDDIPHRLDGA--PEVLEVR 217

Query: 184 GEVYVELAAFAAFNKAAEEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFFGYAWGLVS 243
           GEVY+  A FA  N    E G +T+ANPRN AAGSLRQ+D +I+  RPL+FF YAWG +S
Sbjct: 218 GEVYMSHADFAELNARQAETGGKTFANPRNAAAGSLRQLDAEITRARPLKFFAYAWGEIS 277

Query: 244 EGFADSQWGALERLAEWGFVTTAPPAQRVLNAQGLLDIYAQFEVLRPTLGFDIDGVVYKV 303
              A++Q   L R  E+GF T  P   R    + +L  Y   E  R TLG+DIDGVVYK+
Sbjct: 278 APLAETQTETLARFREFGF-TINPLTVRCETPEDMLAQYRAIEAQRATLGYDIDGVVYKL 336

Query: 304 DDLELQRRLGFVSRSPRWAIARKFPAQRARTVLEAIDLQVGRTGAITPVARLKPVTVGGV 363
           DDL+LQRRLGF S +PRWAIA KFPA+ A T LEAID+QVGRTGA++PVARL PVTVGGV
Sbjct: 337 DDLDLQRRLGFRSTTPRWAIAHKFPAELAWTRLEAIDIQVGRTGALSPVARLAPVTVGGV 396

Query: 364 SVTNATLHNGDEIA-----------RLDVRVGDTVVIQRAGDVIPQIVEVALDARPDPAP 412
            V+NATLHN D I              D+RVGD V + RAGDVIP+I +V L  RP+ A 
Sbjct: 397 VVSNATLHNEDYIQGRDNTGAPIRWGTDIRVGDWVQVYRAGDVIPKIRDVDLSRRPEGA- 455

Query: 413 PPYEFPHVCP-CPLQTPLAREVTASGQESVVRRCTGEFACPFQRVEHLRHFVSRRAFDIE 471
            P++FP  CP C    P  RE         VRRC+G   CP Q VE L+HFVSR A DI+
Sbjct: 456 APFDFPTTCPECGSDAP--RE-----PGDAVRRCSGGLICPAQAVEKLKHFVSRGALDID 508

Query: 472 GLGEKQLQAFFEEGWITEPADIFKL-ARDAEKLAVLREREGYGETSVANLVKGIEARRTI 530
           GLG KQ++ F+ +GWI EPADIF L AR  + L  L+ REG+G+ S  NL + I+  RT 
Sbjct: 509 GLGAKQVEQFYRDGWIAEPADIFTLRARFGQGLQQLKNREGWGDKSAENLFRAIDTARTA 568

Query: 531 GMDRMIYGLGARDIGETTSTVLARNFDRFEDLQAAAEAAARALPGETYLELSTAPGVG 588
              ++++GLG R IGE+ S++LA ++   E L AA +AA      + + +L    GVG
Sbjct: 569 PFAKVLFGLGIRHIGESASSLLANHYLTMEALLAAVDAAVDE-TSDAWADLLNIDGVG 625



 Score =  131 bits (329), Expect = 2e-34
 Identities = 86/208 (41%), Positives = 114/208 (54%), Gaps = 8/208 (3%)

Query: 571 RALPGETYLELSTAPGVGPKALDMLVEAGKGGVVADPWPQTDDLELKIGHAVPKLTKPAR 630
           RA  G+   +L    G G K+ + L  A       D        ++  G  +  + + A 
Sbjct: 534 RARFGQGLQQLKNREGWGDKSAENLFRA------IDTARTAPFAKVLFGLGIRHIGESAS 587

Query: 631 AALAQRYGTWDAFADGLVAAASGAPGDDYLHLAAIDGVGPVAAQSLARFFAEDHNRQKVA 690
           + LA  Y T +A     V AA     D +  L  IDGVG V A++L     ++  R  V 
Sbjct: 588 SLLANHYLTMEALL-AAVDAAVDETSDAWADLLNIDGVGEVMARALVTTLTQEAERASVN 646

Query: 691 NLVAELDIQPVAKPKT-DTAVAGKTIVFTGSLEKMTRDEAKAQAEGLGAKVASSVSKKTD 749
            L+A++D  P   P+  D+ VAGKT+VFTG+LE M+R EAKA AE LGAKVA SVS KTD
Sbjct: 647 RLLAQIDPAPATPPQVGDSPVAGKTLVFTGTLETMSRAEAKATAEALGAKVAGSVSAKTD 706

Query: 750 LVVAGPGAGSKLKTATDLGIQVMTEDEW 777
           L++AGPGAGSK   A  LGI+V+ ED W
Sbjct: 707 LLIAGPGAGSKATKAEALGIEVIDEDAW 734