Pairwise Alignments

Query, 783 a.a., NAD-dependent DNA ligase from Caulobacter crescentus NA1000

Subject, 691 a.a., DNA ligase, NAD-dependent (RefSeq) from Shewanella sp. ANA-3

 Score =  449 bits (1154), Expect = e-130
 Identities = 250/571 (43%), Positives = 351/571 (61%), Gaps = 27/571 (4%)

Query: 1   MSQIPVADLTEAQAVEDLERLADLLATHDIAYHQEDNPTVSDAEYDALKRRNLDIETRFP 60
           +S++    +T   A   ++ L   L  H+I Y+ +D P+++D+EYD L +R   +E  +P
Sbjct: 12  LSELLSQAVTPHNAQPIMQALCQSLNEHNIRYYVDDAPSITDSEYDRLMQRLKQLEAEYP 71

Query: 61  HLVRDNSPSMRVGATRAEQFAPVEHGVPMLSLDNAFSNDEAIEFDARVRRFLRISPSETV 120
             V  +SP+ RVG     +F  + H  PMLSLDNAF   +   F  RV    R+     V
Sbjct: 72  QFVAADSPTQRVGGMALAKFEQITHLKPMLSLDNAFDEADFSAFHKRVSD--RVGE---V 126

Query: 121 AYTAEPKIDGLSASLRYEKGVLVQGATRGDGRVGEDVTANLRTIADIPHRLKGSGWPDVI 180
           ++  EPK+DGL+ S+ Y  GVL + ATRGDG VGED+T N++TI  IP +L+G  +P+++
Sbjct: 127 SFCCEPKLDGLAVSILYRNGVLERAATRGDGTVGEDITENVKTIKSIPLKLRGDNYPELV 186

Query: 181 EVRGEVYVELAAFAAFNKAAEEAGQRTYANPRNFAAGSLRQIDPKISAQRPLRFFGYAWG 240
           EVRGE ++  AAF A N+ A    ++ + NPRN AAGSLRQ+D KI+A R L F+ YA G
Sbjct: 187 EVRGEAFMPKAAFEALNERARLKDEKLFVNPRNAAAGSLRQLDSKITASRALSFYAYALG 246

Query: 241 LV---SEGFADSQWGALERLAEWGFVTTAPPAQRVLNAQGLLDIYAQFEVL---RPTLGF 294
           +V   S   A + +  L++L  WG     P +  +     L  ++A ++ +   R  L F
Sbjct: 247 VVEPTSHELAKTHYEQLQQLKSWGL----PVSSEIKVCDELSQVFAYYQDILTRRADLPF 302

Query: 295 DIDGVVYKVDDLELQRRLGFVSRSPRWAIARKFPAQRARTVLEAIDLQVGRTGAITPVAR 354
           +IDGVV KV+D+  Q+ LGFV++SPRWAIA KFPAQ   T+LE +D QVGRTGA+TPVAR
Sbjct: 303 EIDGVVMKVNDIAQQQTLGFVAKSPRWAIAYKFPAQEEMTLLEGVDFQVGRTGAVTPVAR 362

Query: 355 LKPVTVGGVSVTNATLHNGDEIARLDVRVGDTVVIQRAGDVIPQIVEVALDARPDPAPPP 414
           LKPV VGGV+V+NATLHN DEIARL V VGDTV+I+RAGDVIPQIV +  + RP+ A   
Sbjct: 363 LKPVFVGGVTVSNATLHNADEIARLGVMVGDTVIIRRAGDVIPQIVAIVPERRPEDA-KA 421

Query: 415 YEFPHVCPCPLQTPLAREVTASGQESVVRRCTGEFACPFQRVEHLRHFVSRRAFDIEGLG 474
             FP  C      P+   +    +   V RC+G   C  QR E ++HF SR+A DI+G+G
Sbjct: 422 IAFPQHC------PVCGSLVERLEGEAVARCSGGLFCEAQRKEAIKHFASRKALDIDGMG 475

Query: 475 EKQLQAFFEEGWITEPADIFKLARDAEKLAVLREREGYGETSVANLVKGIEARRTIGMDR 534
           +K ++   ++  +  PAD+FKL   A  + +L   +  G  S  NL   IEA +T  + R
Sbjct: 476 DKIVEQLIDKELVQSPADLFKLT--ASMMTML---DRMGIKSATNLALAIEAAKTTTLPR 530

Query: 535 MIYGLGARDIGETTSTVLARNFDRFEDLQAA 565
            +Y LG R++GETT+  LA +F   E L+ A
Sbjct: 531 FLYALGIREVGETTAANLATHFGSLEALRVA 561



 Score =  102 bits (255), Expect = 5e-26
 Identities = 57/123 (46%), Positives = 82/123 (66%), Gaps = 2/123 (1%)

Query: 662 LAAIDGVGPVAAQSLARFFAEDHNRQKVANLVAE-LDIQPVAKPKTDTA-VAGKTIVFTG 719
           L  ++ +G V AQ +A FFA+ HN + +  L+A  ++   +A P  D   + G+T V TG
Sbjct: 566 LIQVEDIGEVVAQHVAHFFAQPHNLEVIDALIAAGVNWPAIAAPSADEQPLKGQTWVLTG 625

Query: 720 SLEKMTRDEAKAQAEGLGAKVASSVSKKTDLVVAGPGAGSKLKTATDLGIQVMTEDEWLE 779
           +L ++ R++AKAQ + LGAKVA SVSK TD +VAG  AGSKL  A +LG++V+ EDE L 
Sbjct: 626 TLNQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIGEDELLA 685

Query: 780 LVA 782
           L+A
Sbjct: 686 LLA 688