Pairwise Alignments

Query, 288 a.a., cytochrome cbb3 oxidase, diheme subunit, membrane-bound ccoP from Caulobacter crescentus NA1000

Subject, 305 a.a., cytochrome c oxidase, cbb3-type, subunit III from Pseudomonas stutzeri RCH2

 Score =  177 bits (449), Expect = 3e-49
 Identities = 102/278 (36%), Positives = 145/278 (52%), Gaps = 24/278 (8%)

Query: 13  ETTGHEWDGIRELDNPLPRWWLWIWYATIAFSIGYWVLMPA---WPG-LNGYTKGLLNKS 68
           ET GH +DGI E DNPLPRWW  ++  T+ F++GY VL P    W G L GY  G     
Sbjct: 38  ETVGHSYDGIEEYDNPLPRWWFMLFVGTVIFALGYLVLYPGLGNWKGILPGYEDGWTQVK 97

Query: 69  DRAEVGQELKALEAHRGEGAAMLRTASLEQIEKDPKLQAYAQQVGQSVFGDNCATCHGIG 128
              E  +E+   +   G   A      +E++ KDP+    A ++G  +F  NC+ CHG  
Sbjct: 98  ---EWQREMDKADEQYGPLYAKYAAMPVEEVAKDPQ----ALKMGGRLFASNCSVCHGSD 150

Query: 129 GTGSKGYANLRDDVWLWGGKLEDIQYTITHGIRSGAEGARVSQMPAYGRDEMLKPEQIDD 188
             G+ G+ NL DD WLWGG+ E I+ TI HG        R + MPA+   ++   E I +
Sbjct: 151 AKGAYGFPNLTDDDWLWGGEPETIKTTILHG--------RQAAMPAW--KDVFGEEGIRN 200

Query: 189 LTEYVVNLSRRPAN---AAAVARATPLFEAQCSACHGPQGQGNQQLGAPNLTDADWLFGA 245
           +  YV +LS R      +  + +   +F A C  CHGP+ +G   +GAPNLTD  WL+G+
Sbjct: 201 VAGYVRSLSGRDTPEGISVDIEQGQKIFAANCVVCHGPEAKGVAAMGAPNLTDNVWLYGS 260

Query: 246 DRASIRGQIYAGNGGVMPAWSGRLSPETIKALTVYIHS 283
             A I+  +  G  G MPA    L  + +  L  Y++S
Sbjct: 261 SFAQIQQTLRYGRNGRMPAQEAILGNDKVHLLAAYVYS 298



 Score = 61.6 bits (148), Expect = 2e-14
 Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 212 LFEAQCSACHGPQGQGNQQLGAPNLTDADWLFGADRASIRGQIYAGNGGVMPAWSGRLSP 271
           LF + CS CHG   +G    G PNLTD DWL+G +  +I+  I  G    MPAW      
Sbjct: 138 LFASNCSVCHGSDAKG--AYGFPNLTDDDWLWGGEPETIKTTILHGRQAAMPAWKDVFGE 195

Query: 272 ETIKALTVYIHSNAG 286
           E I+ +  Y+ S +G
Sbjct: 196 EGIRNVAGYVRSLSG 210