Pairwise Alignments

Query, 606 a.a., single-stranded-DNA-specific exonuclease recJ from Caulobacter crescentus NA1000

Subject, 606 a.a., RecJ exonuclease (NCBI) from Rhodospirillum rubrum S1H

 Score =  502 bits (1292), Expect = e-146
 Identities = 274/588 (46%), Positives = 368/588 (62%), Gaps = 7/588 (1%)

Query: 12  SAFLGVERSLSGRAWRERPADLAVVREIQQRHGLIEPLAKALVSRGVTLEHAEHYLRPTL 71
           +AFLGVERS  GR W  RP D      I QR G+ E + + L  RGV +E A+ +L PTL
Sbjct: 18  AAFLGVERSRGGRRWVLRPGDERQALAISQRLGVPEVVGRVLTGRGVQVEEADGFLTPTL 77

Query: 72  KALFPDPSLFTDMDRAAEILIDALERGRPTMVFADYDVDGATSAAQLVRWFRHMGVELPI 131
           +AL PDP    DMD+A   L  A+       +F DYDVDGATS A + R+FR +G  + I
Sbjct: 78  RALLPDPGHLLDMDKAVARLSKAVRDKETIAIFGDYDVDGATSTALMHRFFRSLGARVLI 137

Query: 132 YIPDRLTEGYGPSPAAFRKIRDGGAELVVTLDCGAAAYDAIASAGEIGLEVVVIDHHLMR 191
           +IPDR+ EGYGP+  A   +   GA +V+T+DCG +A+DA+ +A   GL+VVV DHH  R
Sbjct: 138 HIPDRVLEGYGPNAPALEALAAKGARVVLTVDCGISAFDALRAAKAAGLDVVVCDHHEAR 197

Query: 192 EDPPAAAAVVNPNRPGCPSGQGVLAAAGVTFVLLTALNREARKRGLF-TEDRPQPDPRQW 250
            + PAA AVVNP R    S    LAA GV F++  A+NR+ R  G F  E RP PD    
Sbjct: 198 TELPAAVAVVNPKRLDEASPHTHLAAVGVAFLMAVAINRDLRDSGWFAAEQRPPPDLMAL 257

Query: 251 LDLVALGEVCDVTQLVGFNRALTALGLRAMGAWANPGLKALFEVGKGSGEPSVFTAGFIL 310
           LDLVALG VCD+  L+G NRAL   GL+ +    NPG+ AL EV         F  GF+L
Sbjct: 258 LDLVALGTVCDMVPLIGVNRALVQQGLKVIAKRTNPGIAALAEVSGVRDRVDAFHLGFML 317

Query: 311 GPRINAGGRVGRSDLGARLLSTDDPLEARALAEELDSLNTERKAVEAAVVEEAAAMLERG 370
           GPR+NAGGRVG++ +GA LLS++DPLE    A +LD+ N  RK +EAAV+ +A   +E  
Sbjct: 318 GPRVNAGGRVGQAGMGAALLSSEDPLECLDFARQLDAFNGARKEIEAAVLHQAIEQVEAA 377

Query: 371 SNFNPDAPVIVVAGDDWHPGVIGIVAGRLRERYRKPVVVIGIDRAANVGKGSGRSQSGVN 430
                D P++  +G DWHPGV+GIVA RL+ERY  P   + +D    + KGSGRS  GV+
Sbjct: 378 P--ANDLPLVFASGTDWHPGVVGIVASRLKERYGLPACAVALD--GGLAKGSGRSVGGVD 433

Query: 431 LGRAIQAAFEAGLLMAGGGHAMAAGLSIRPEMIPEFRAFLEERLAGEMEAVG-VEAVEVD 489
           LGR + AA EAG+L AGGGHAMAAG S+R + + EFR FL ERL  ++ A+  V ++++D
Sbjct: 434 LGRVVIAAREAGVLEAGGGHAMAAGFSLRTDRLEEFRQFLGERLKDQVAALALVASLDLD 493

Query: 490 ALVQPRAANRALLDDFQRLAPFGPGNPEPLFALSQVRPERVSALKGGHVRMDLVGPTGDR 549
            ++  R AN  L+    +  P+G GNPEP FA++  R  +V  +  GHVR  L GP+G  
Sbjct: 494 GVLDVRGANAQLVRALSQAGPYGSGNPEPRFAVANARVGKVDVVGMGHVRCFLNGPSGGS 553

Query: 550 IKAISWRSAETPLGQRLL-AGGGPLDVVGKLKPDDYMGRNGVQLEIED 596
           +KA+++++A++ +G  LL A G  L V G L+ D + GR  V L ++D
Sbjct: 554 LKAMAFKAADSEIGHALLTAHGASLHVAGTLRLDSFQGRETVVLVVDD 601