Pairwise Alignments

Query, 606 a.a., single-stranded-DNA-specific exonuclease recJ from Caulobacter crescentus NA1000

Subject, 577 a.a., bacterial RecJ exonuclease from Marinobacter adhaerens HP15

 Score =  261 bits (668), Expect = 4e-74
 Identities = 178/489 (36%), Positives = 264/489 (53%), Gaps = 24/489 (4%)

Query: 46  IEPLAKAL-VSRGVTLEHAEHYLRPTLKALFPDPSLFTDMDRAAEILIDALERGRPTMVF 104
           + PL + L  +RGVT +    Y   TLK L   P     +DRA E+L +A+++ +  +V 
Sbjct: 22  LPPLLRRLYAARGVTSDEQLSY---TLKHL-ASPLSLRGIDRAVELLAEAIDQQQRVLVL 77

Query: 105 ADYDVDGATSAAQLVRWFRHMGVE-LPIYIPDRLTEGYGPSPAAFRKIRDGGA--ELVVT 161
            D+D DGATS A  +     +G++ +   +P R  +GYG +P    ++RD G   +L+VT
Sbjct: 78  GDFDADGATSTAVAMLGLSMLGLQSIDFRVPSRFADGYGLTPGIIERLRDEGQLPDLMVT 137

Query: 162 LDCGAAAYDAIASAGEIGLEVVVIDHHLMREDPPAAAAVVNPNRPGCPSGQGVLAAAGVT 221
           +D G +A + + +A E+G++V+V DHHL  E+ P A A+VNPN+PGCP      A  GV 
Sbjct: 138 VDNGISAVEGVRAAKELGVKVMVTDHHLAGEELPDADAIVNPNQPGCPFLSKNAAGVGVM 197

Query: 222 FVLLTALNREARKRGLFTEDRPQPDPRQWLDLVALGEVCDVTQLVGFNRALTALGLRAM- 280
           F +LTAL ++ R+     +  P+P+    LDLVALG V DV  L   NR     GLR + 
Sbjct: 198 FYVLTALRKQLRETNRLPD--PEPNLGCLLDLVALGTVADVVPLDHNNRIFVEQGLRRIR 255

Query: 281 GAWANPGLKALFEV-GKGSGEPSVFTAGFILGPRINAGGRVGRSDLGARLLSTDDPLEAR 339
              A PG+ AL EV G+     S    GF++GPR+NA GR+    +G   L  D P EAR
Sbjct: 256 QGEARPGILALLEVAGRDHTAISSTDLGFVVGPRLNAAGRLDDMSIGIACLLADSPDEAR 315

Query: 340 ALAEELDSLNTERKAVEAAVVEEAAAMLERGSNFNPDAP-VIVVAGDDWHPGVIGIVAGR 398
            LA ELD+ N ER+ +E  +  +A  +L   S      P  + +   DWH GVIGI+A R
Sbjct: 316 RLARELDTFNRERRTIEKDMKAQAQDLLSSMSLDLDGLPWGLALFDTDWHQGVIGILAAR 375

Query: 399 LRERYRKPVVVIGIDRAANVGKGSGRSQSGVNLGRAIQAAFEA---GLLMAGGGHAMAAG 455
           +RE+  +P +    D      KGS RS  G+++ R + A  ++   G++   GGHAMAAG
Sbjct: 376 IREQTHRPTIAFAPDENGVDIKGSARSIPGLHI-RDVLAVVDSRHPGIMKKFGGHAMAAG 434

Query: 456 LSIRPEMIPEFRAFLEERLAGEMEAVGVE-AVEVDALVQPRAANRALLDD---FQRLAPF 511
           +++  + +  F    +  +   + A  +E A+  D    P  A+   LD     +R  P+
Sbjct: 435 MTLARDDLDAFSEAFDRAVRDTLSAEDLEAAITTDG---PLGASELSLDTAALLKRAGPW 491

Query: 512 GPGNPEPLF 520
           G   PEPLF
Sbjct: 492 GQHFPEPLF 500